Pseudomonas syringae pv. syringae B728a: Psyr_4948
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Entry
Psyr_4948 CDS
T00246
Name
(GenBank) ATP-dependent DNA helicase, RecQ-like protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psb
Pseudomonas syringae pv. syringae B728a
Pathway
psb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psyr_4948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psb03019
]
Psyr_4948
03400 DNA repair and recombination proteins [BR:
psb03400
]
Psyr_4948
Enzymes [BR:
psb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Psyr_4948
Messenger RNA biogenesis [BR:
psb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Psyr_4948
DNA repair and recombination proteins [BR:
psb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Psyr_4948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAY39975
UniProt:
Q4ZLJ7
LinkDB
All DBs
Position
complement(5864093..5866042)
Genome browser
AA seq
649 aa
AA seq
DB search
MDGPRMHQRLEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHL
TLVVSPLLALIQDQLAFLHRHGISAASIDSAQSRDEIADVMARARSGELKILMISVERLK
NERFRNFIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQTLLLTATATPQ
VIIDMQDKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRRLVEWLNERRGQPTIVYVTL
QKTAEHIAAHLEQNGLPASAYHAGLPNDQRESIQKQFMGGHLNCIVATIAFGMGIDKSDI
RNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIARV
LEDLLGARHDGQWEFLLGPLADLSNIRQLPLKTLLVQLELRGIIAPRYAYFAEYRFKFLL
QPQDLMARFEGERREFVQALIDTSNRARTWATVDFEAMYQQYGAERGRVVKALDYFQEKG
WIELESKQMTEVYSLLRSDFDAQALSIELHDYFAHHEATEVARIHTMLDVFASDQCLTHR
LARYFGDHNAPERCGHCSVCLGEVAHLPEPPALEPLANRDFQQLCSEFIHKHQNYTGQPP
SADCLTRFLCGISVPLFTRLKARATTGFAVLEDYPYAQVRTWVQAMAGN
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggatggaccgcgaatgcaccagcgtctcgaacaggtattcggctacacacagttccgg
ccggggcaggaggctgccatcagtgcggtactggccggacgctcggctgcggcgatcttt
ccgactggctcgggcaagtcgctatgttaccaattgcctgctttgatgttgccgcatttg
acgctggtggtgtcgccgttgctggcgctgattcaggatcagcttgccttcctgcaccgc
catggcatatcggcggcgagcattgattcggcgcaaagccgcgacgagatcgctgacgtg
atggcacgcgcacgttccggcgagctgaagattctgatgatctcggtcgagcgcctgaag
aacgagcgcttccgcaatttcatcgctcaagtgccgatttccctgctggtggtcgacgaa
gcgcactgcatttcggagtgggggcataacttccgccccgactacctgaagctgccggac
taccagcgcgaattcaatattccccagacattgctgctgaccgccacggcgaccccgcaa
gtcatcatcgacatgcaggacaaattcgccatcgcccccgaggatgtgatcaccaccggt
ttctaccgcgccaacctgcacctgtgggtcaagccggtcagcggccgtgacaaacgacgc
cggctggtagagtggctcaacgagcgtcgcgggcaaccgaccatcgtttacgtgaccctg
caaaagacagccgaacatatcgccgcgcacctggaacagaatggcctgcccgccagcgcc
taccatgccgggctgcccaacgatcagcgcgagtcgatccagaagcagttcatgggcggc
catttgaactgcatcgtggcaaccatcgcgttcgggatgggcatcgacaagagcgatatc
cgcaatgtggtgcatttcgacctgccgaaatccatcgagaactacagccaggaaatcggt
cgggcagggcgtgatggtgctgcttcggattgtctggtgctggctaaccgcgacagcctc
aacgtgctggagaacttcgtgtatggcgatacgcccgagcgcgaggggattgcccgtgtg
ctggaagacttgctcggggcgcgccatgacgggcagtgggagtttctgctggggccgctc
gccgacctcagcaacattcgtcaattgccgctgaagaccctgctggtgcaactggagctg
cgcgggatcattgcgccgcgctacgcgtattttgccgagtaccgcttcaagtttctgctt
cagccgcaagacctgatggcgcgtttcgaaggagagcgacgcgagttcgttcaggccctg
attgacacctcaaaccgggcacgcacctgggccaccgtcgatttcgaggcgatgtaccag
caatatggcgccgagcgcgggcgggtggtcaaggcgctggattactttcaggaaaaaggc
tggatcgagcttgaaagcaaacagatgaccgaggtctacagcctgttgcgcagcgacttt
gatgctcaggccttgagcatcgaattgcacgattatttcgctcatcacgaagccactgaa
gtggcgcgcattcacaccatgctggacgtgttcgccagtgatcagtgcctgacccatcgc
ctggcgcggtactttggtgaccacaatgcgcctgagcgctgtgggcattgttcagtgtgc
ctgggcgaagtcgcccacctgcccgaaccacccgcgctggagcccttggcaaatcgggac
tttcagcaactgtgcagcgagtttatccacaagcaccagaactacaccggccagccgccc
agcgccgactgcctgacgcgttttctatgcggtatcagcgtgccgctgttcaccaggctc
aaagcccgcgccaccaccgggtttgcggtgctggaggactatccgtacgcacaggtcagg
acgtgggtgcaggcgatggctggcaactga
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