Pseudoxanthomonas spadix: DSC_00040
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Entry
DSC_00040 CDS
T01643
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
psd
Pseudoxanthomonas spadix
Pathway
psd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSC_00040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psd03400
]
DSC_00040
Enzymes [BR:
psd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
DSC_00040
DNA repair and recombination proteins [BR:
psd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
DSC_00040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
AER54661
UniProt:
G7URI6
LinkDB
All DBs
Position
complement(3243980..3244780)
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AA seq
266 aa
AA seq
DB search
MRIISFNANGLRSAASKGFFSWFADQDADLLCVQETKAQEHQLAGPDFLPAGYRAYFRDA
STKKGYSGVAIYSKVEPDEIRTALGRPEFDEEGRYLETRFGNLSVVSLYIPSGSSGQLRQ
DYKFQTMAWLRPILDQWLASGRDYVLCGDWNIVRTALDIRNWKSNQNNSGCLPAERDWLN
GLCADATGEADIASGRGWVDAYRVLHPTGQDYTWWSNRGAARANNVGWRIDYQLLTPGLR
ARLQGCSIHRERRFSDHAPFIVDYAG
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcatcagtttcaacgccaacggcctgcgctcggccgcctccaagggatttttt
tcgtggttcgccgatcaggacgcggacctgctgtgcgtgcaggaaaccaaggcccaggag
caccagctggccggcccggatttcctccccgccggctacagggcgtacttccgtgacgcc
agcaccaaaaagggttattcgggcgtggcgatctacagcaaggtcgaacccgacgaaatt
cgcaccgcgctgggcaggccggaattcgacgaggaaggccgctatctggagacccggttc
ggcaacctgagcgtggtgtcgctgtacatcccgtccggctcgtcgggccagctgcgccag
gactacaagttccagaccatggcctggctgcggccgatcctggaccagtggctggccagc
ggccgcgattacgtgctgtgcggggactggaacatcgtgcgcaccgcgctggacatcagg
aactggaagtccaaccagaacaactccggttgcctgccggccgagcgcgactggctcaac
ggcctgtgcgccgatgcgactggcgaggcggacatcgccagcggccgcgggtgggtcgac
gcctaccgcgtgctgcatccgaccggccaggactacacctggtggtccaaccgcggcgcg
gcgcgtgccaacaatgtgggctggcgcatcgactatcagttgctgaccccgggcctgcgc
gcgcggctgcaggggtgttcgatccatcgcgagcggcgcttttccgaccacgcgcccttc
atcgtggactacgccggatga
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