Pseudoxanthomonas spadix: DSC_08155
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Entry
DSC_08155 CDS
T01643
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psd
Pseudoxanthomonas spadix
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psd03016
]
DSC_08155
Enzymes [BR:
psd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
DSC_08155
Transfer RNA biogenesis [BR:
psd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DSC_08155
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AER56282
UniProt:
G7UUJ1
LinkDB
All DBs
Position
complement(1583203..1584330)
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AA seq
375 aa
AA seq
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MSPEPANPAFTEETCVTLWIDTADALRAHLQQLPAWVGMDTEFIREKTFWPQLALVQIAI
GDRILLVDPLVPGINQALAPLLSNPDVVKVMHSASEDLVALGWACGTQPSPLFDTQIAAA
LAGVGGGLGYQKLVAEITGVPLAKGETRSDWLRRPLSAAQLEYAADDVTHLGAIYQALSA
RLDALGRSPWLAADCARMVAQASDAGGERWPHLSMRSAQFVDADAQRRLLRLLRWREAQA
RASDRPRSWILDNELALTLARNPPASRQALTRWLEQQPKAPRKLADAIWEALSTPLEDEA
EAPLAKATDQDKQRLKKMQDAVARQAAALGLPDGILASRRWLEALMERGQWPAALSGWRR
EQLEPVLAPLLPPAP
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgcccgagccggcaaaccccgcattcaccgaagagacctgcgtgaccctctggatc
gacaccgccgacgcgctgcgtgcgcacctgcagcagctgcccgcctgggtgggaatggac
accgaattcatccgcgaaaagaccttctggccgcagctggccctggtccagatcgccatc
ggcgacaggatcctgctggtcgatccgctggtgccgggcatcaaccaggcgctggccccg
ctgctgtccaatcccgatgtggtcaaggtgatgcacagcgccagcgaagacctggtggca
ctgggatgggcctgcggcacccagccttcgccgctgttcgacacccagatcgccgcggcg
ctggccggcgtgggcggcggcctgggctaccagaagctggtcgccgagatcaccggcgtg
cccctggccaagggcgagacccgttcggactggctgcgccggccgctgtcagccgcacag
ctggaatacgccgccgacgatgtcacccacctgggcgcgatctaccaggccctgtcggcc
aggctggacgcgctgggccgcagcccgtggctggccgccgactgtgcgcgcatggtcgcc
caggccagcgacgccggtggcgaacgctggccgcacctgtccatgcgcagtgcgcagttt
gtcgatgccgacgcccagcgccggctgctgcgcctgttgcgctggcgcgaggcccaggcc
cgggccagcgatcggccgcgcagctggatcctggacaacgaactggccctgaccctggcg
cgcaacccgccggcctcgcgccaagcgttgacgcgctggctggagcagcagcccaaggct
cccagaaagctggccgatgcgatctgggaggcgctgtccacgcccctggaagacgaagcc
gaggcaccactggccaaggccaccgaccaggacaagcaacgcctgaagaaaatgcaggac
gcggtggcccggcaagcggccgcgctcggcctgcccgacggcatcctggcctcgcgccgc
tggctggaggcgctgatggagcgcggccaatggccggccgcgctgtccggctggcgccgc
gagcagctggaaccggtgctggcaccgctgctgccgcccgccccctga
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