KEGG   Pseudonocardia sp. AL041005-10: WY02_17950Help
Entry
WY02_17950        CDS       T04051                                 

Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psea  Pseudonocardia sp. AL041005-10
Pathway
psea03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psea00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    WY02_17950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psea03400]
    WY02_17950
Enzymes [BR:psea01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     WY02_17950
DNA repair and recombination proteins [BR:psea03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     WY02_17950
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ALE80002
UniProt: A0A0M4QAB8
LinkDB All DBs
Position
3850947..3851861
Genome map
AA seq 304 aa AA seqDB search
MLATPGPLPTGAGWSFEVKWDGMRVLAEVTDGGGEPALRLRTRSGRDVTANFPELAGLVD
LAPDVLLDGEVVLLDGGVPSFAALAHRIHGPAGGRPVTFMVFDVLRLYGVPLLDRPLAER
RATLERLDLSATPHVETSPLYPDGAALLEVTASRGLEGVVAKRADSRYRPGRRSPDWVKI
AHRHSQSCVVGGWRPERSGGAGRIGALLLGVPGPDGLEFAGRVGSGLAGAAVQELLTARL
TGAPESPFAQVLPRVDAAGARWCSPTVVAEVAHLGWTAAGRLRQPVFRGIRDDVDAADVR
REPR
NT seq 915 nt NT seq  +upstreamnt  +downstreamnt
atgctcgccacccccggacccctgccgaccggggccggctggtcgttcgaggtcaagtgg
gacggcatgcgcgtgctggccgaggtcaccgacggcggtggcgagccagctctgcgtctg
cgtacccgttccggccgcgatgtcaccgcgaacttccccgaactcgccggtctggtggac
ctggcccccgacgtgctcctcgacggcgaggtggtgctgctcgacggtggtgtccccagc
ttcgccgcgctcgcccaccggatccacggccccgcgggcggccgcccggtcacgttcatg
gtgttcgacgtgctgcgcctctacggggtgccgctgctcgaccgcccgctggccgagcgc
cgggccaccctggaacggctggacctgtccgcgaccccgcacgtcgagacctcgccgctc
tacccggacggggccgccctgctggaggtgacggcgtcgcgggggctggagggcgtcgtc
gccaagcgggcggactcgcggtaccggcccggccggcgcagcccggactgggtgaagatc
gcccaccggcactcgcagtcctgtgtggtgggcggctggagacccgagaggtccggtggt
gcggggcggatcggggcgctgctgctcggtgtccccgggccggacgggctggagttcgcc
ggccgggtcgggtccgggctggccggggcggcggtgcaggagctgctcaccgcccggctg
accggggcaccggagtcgccgttcgcgcaggtcctgccccgggtcgacgccgcgggcgca
cgctggtgctccccgacggtcgtcgccgaggtcgcccatctcgggtggacggcggccggc
cggctgcggcagccggtcttccgcgggatccgcgacgacgtcgacgccgccgacgtccgc
cgggaaccccgctga

DBGET integrated database retrieval system