KEGG   Pseudomonas sp. CCOS 191: CCOS191_2691Help
Entry
CCOS191_2691      CDS       T03967                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psec  Pseudomonas sp. CCOS 191
Pathway
psec03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psec00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CCOS191_2691
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psec03400]
    CCOS191_2691
Enzymes [BR:psec01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CCOS191_2691
DNA repair and recombination proteins [BR:psec03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CCOS191_2691
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: CRI57227
UniProt: A0A0F7Y8B8
LinkDB All DBs
Position
I:3071830..3074301
Genome map
AA seq 823 aa AA seqDB search
MAKPLQEYQRKRDFNATPEPAGKRGRTGKAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGNIPEGHYGAGDVIVWDRGIWEPEGDPREA
YAKGKLRFRLQGEKLSGIWNLFRTHLAGKKEQWMLVKSHDGQARSETDYRIVEALPDSVL
SDRTLLPRQPAKTAAANKRKAKASPVALPDRLQPQLATLVDSPPGGHWHYEVKFDGYRIL
ARIEGEDVRLFTRNGHDWSAKMPRQVEALKALGLDSAWLDGEMVVVDDQGVADFQALQNA
FDTEHDEHITYYLFDLPYLGGEDLRQLPLQARRATLARLLENTPSDLLKFSADFTEPVDS
LLDSACRLKLEGLIGKRADSPYVGRRSSDWIKLKCKQRQEFVIVGYTDPKGSRNAFGALL
LALHDTDSGQLRYAGKVGTGFSATTLDSLHARLKPLEVDKPALPKPPRSAEARGVHWLKP
QLLVEVAYAQMTREGIVRHSVFHGLRDDKPATAIDLERAMPAKRAAQPPAETLGSLRLTH
PDRVVDASTGTTKRQVAEYYAQIADWLLPQLKDRPVALVRAPDGLGGELFFQKNAGQLHI
PAVHSYSKAQAGQAAMVLNRADSLLGAVQMNMLELHTWNATDKNFDKPDRFVLDLDPDPA
LPWKAMLEATQLTLTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDFSHALVEHM
AGLFPERLSAVSGPRNRVGRIFIDYLRNGRGATTVAAYSLRAREGLPVSVPIWREELTQL
KGANQWHIGNLQARLAEVDDPWADMAKTRQSITVRMRKQLGID
NT seq 2472 nt NT seq  +upstreamnt  +downstreamnt
atggccaagcccctgcaggagtaccagcgcaagcgcgacttcaacgccacgcccgaacct
gccggcaaacgcggccgcacgggcaaggcccatgccttgcagttctgcatccagaaacac
gacgccagccacttgcactacgactttcgcctggagctcgatggcaccttgaaaagctgg
gccattcccaagggcccctcgctcgaccccaaggtccgccgcctggccgtgcatgttgag
gatcacccgctggactacgccgatttcgaaggcaatatccccgaaggccactacggcgcc
ggtgacgtgatcgtctgggatcgtggtatctgggagcctgagggcgacccgcgcgaggcc
tacgccaagggcaagctgcgctttcgcctgcagggcgagaagctgtcaggtatctggaac
ctcttccgcacccacctggccggcaagaaggagcagtggatgctggtcaagtcccacgat
ggccaggcccgcagcgaaaccgactaccgcatcgtcgaagccttgccggacagcgtgctt
agcgaccgtaccctgctgccgcgccagcctgcaaaaacagccgctgccaacaaacgcaag
gccaaggccagccccgtcgccctgccggacaggctccagccgcaactcgccaccctggtc
gattcaccgcctggtggtcactggcactacgaggtgaagttcgacggctaccgcatcctc
gcccgcatcgaaggcgaggatgtgcggctgttcacccgtaatggccacgactggagcgcg
aagatgccgcgtcaggtcgaggccttgaaagcgctggggctcgattcggcgtggcttgat
ggcgagatggtggtggtcgacgaccagggtgtggccgacttccaggccttgcagaacgcc
ttcgacaccgagcacgacgaacacatcacctattacctgttcgacctgccctacctgggt
ggagaggatctgcgccagctaccgctgcaggcgcgacgtgccaccctggcccggctgctg
gaaaacacgccctcggacctcctcaagttctccgccgacttcaccgaaccggtcgactcg
ctgctcgacagcgcctgccgcctgaagcttgaaggcctgatcggcaagcgcgccgacagc
ccctacgtaggccggcgcagcagtgactggatcaagctcaagtgcaagcagcgccaggag
ttcgtgatcgtcggatacacagaccctaaaggcagccgcaacgccttcggcgccctgctg
ctggccctgcacgacaccgacagcggccagctgcgctatgccggcaaggtcggcaccgga
ttcagcgccaccacgctggacagcctgcatgcgcgcctcaagcccctggaagtcgacaag
ccggccttgcccaagccgccccgcagcgctgaggcccgtggcgtgcactggctcaagccg
caattgctggtcgaagttgcctacgcccagatgacccgcgaaggcatcgtccgtcactcg
gtgttccacggcctgcgcgacgacaaacccgccaccgccatcgacctggagcgtgccatg
cccgccaagcgcgccgcgcagccacccgccgagactctcggcagcctgcgcctgacccac
cccgaccgcgtggtcgacgccagcaccggcaccaccaagcgccaggtcgccgagtactac
gcccagatcgccgactggttgctgccgcaactcaaagaccgccccgtggcgctggtacgc
gcaccggacggactgggtggcgaactgttcttccagaagaacgccggccagctgcacatc
cccgcggtgcacagctacagcaaggcgcaggctggccaggcggcgatggtgctcaaccgc
gccgacagcctgttgggcgcggtgcagatgaacatgctcgaactgcacacctggaatgcc
accgacaagaatttcgacaagcccgaccgcttcgtcctcgacctcgaccccgatccggca
ctgccctggaaagccatgctcgaagcgacccagctgaccctcaccctgctcgatgagctg
ggcctgaaggtgttcctcaagaccagcggtggcaaaggcatgcacctggtggtgccgcta
acccgccgcgccggttgggatgaagtgaaggacttcagccatgccctcgtcgagcatatg
gcgggcctgttcccggagcggctgagcgccgtctccgggccccgcaaccgggttgggcgg
atcttcatcgactacctgcgcaacggcaggggcgccaccacggtcgcggcgtattcgctg
cgggcccgcgaggggctgccggtgtcggtgccgatctggcgcgaagagctgacccagctc
aagggcgccaaccagtggcacatcggcaacctgcaggcgcggctggccgaggtggacgac
ccatgggcggacatggccaagacccggcagtccatcaccgtacgcatgcgcaaacagctg
ggcatcgactga

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