Stutzerimonas frequens: DM292_17940
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Entry
DM292_17940 CDS
T05921
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psed
Stutzerimonas frequens
Pathway
psed03420
Nucleotide excision repair
psed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DM292_17940
03430 Mismatch repair
DM292_17940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psed03400
]
DM292_17940
Enzymes [BR:
psed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DM292_17940
DNA repair and recombination proteins [BR:
psed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DM292_17940
MMR (mismatch excision repair)
Other MMR factors
DM292_17940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_11
AAA_22
DUF3553
Motif
Other DBs
NCBI-ProteinID:
AWT11947
LinkDB
All DBs
Position
3831184..3833373
Genome browser
AA seq
729 aa
AA seq
DB search
MHDDLSLLLNSLNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLHQVERASLHSIL
SVTFTNKAAAEMRQRIEQLLHVNPQGMWVGTFHGLAHRLLRAHWREAKLAENFQILDSDD
QQRLVKRVIRELGLDEQRWPARQAQWWINAQKDEGLRPRNIQAGGDLFLATQLKIYEAYE
EACARAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAK
GGESLMVVGDDDQSIYGWRGARIENLHQFSADFPDAETIRLEQNYRSTACILKAANALIA
NNQGRLGKELWTSGCEGEPISLYAAFNEHDEARYVVESIEKAIRDGMSRSEIAILYRSNA
QSRVLEEALLREKIPYRIYGGQRFFERAEIKNAMAYLRLIQTRDNDAALERVINVPARGI
GEKTVECLRQLAREQGLSMWAALHQAVGTKAVSGRAASALNGFVELVDTLALKVEKLPLH
SMAQLVIEESGLLAYHRDEKGEKAQARVENLEELVSAARAFDNYSEEDDDIQSPLAAFLD
HASLEAGEQQAGDHEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEESGRLEEER
RLAYVGITRAMQQLVITYAETRRLYGSETYNKVSRFVREIPPALVQEVRLNNTVTRSFSG
KSMSGSSLFDGAGVPETPFNLGQRVRHSLFGEGTILNFEGSGAQARVQVNFEDEGSKWLM
LSYAKLEAL
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgatctctctcttctcctgaattccctcaacgatgcccagcgccaggccgtg
gccgcaccgcttggccgccagctggtattggccggcgccggctcgggcaagacccgcgtg
ctggtgcatcgcattgcctggttgcaccaggtcgagcgcgcatcattgcactcgatcctt
tcggtgacctttaccaacaaggctgccgccgagatgcgccagcgcatcgagcaactgctg
catgtgaacccgcagggcatgtgggtcggcaccttccacggcctggcccatcgcctgctg
cgtgcgcactggcgcgaggcaaagctggcggagaatttccagattctcgattccgacgac
cagcagcgcctggtcaagcgggtgatccgcgagctcggcctcgacgagcagcgctggccg
gcgcgccaggcacagtggtggatcaatgcgcagaaggacgaagggctgcgcccacgcaac
atccaggccggcggtgatctgttcctcgccacccagctgaagatctacgaagcctatgaa
gaggcctgcgcccgcgccggcgtcatcgacttctccgagctgctgctacgtgcgctggac
ctgtggcgcgaccaccccggcctgctcgagcactaccagcggcgcttccgccacgtgctg
gtggacgagttccaggacaccaacgccgtgcagtacgcctggctgcgactgctggccaag
ggcggcgagagcctgatggtggtcggcgacgacgaccagtcgatctatggctggcgcggc
gcgcgcatcgagaatctgcaccagttcagcgccgatttcccagacgccgaaaccatccgt
ctggaacagaactaccgctctaccgcctgcatcctcaaggccgccaacgcgctgattgcc
aacaaccagggtcgtctcggcaaggagctctggacctccggctgcgaaggcgagccgatc
agcctgtacgccgcgttcaacgagcacgacgaagcgcgctacgtggtcgagagcatcgag
aaggccatccgcgacggcatgagccgcagcgagatcgccatcctctaccgctccaacgcc
cagtcgcgggtgctggaagaggcgctgctgcgcgagaagattccctaccgcatctacggc
ggccagcgcttcttcgagcgtgccgagatcaagaacgccatggcctacctgcgcctgatc
cagactcgcgacaacgacgcggcgctggaacgggtgatcaacgtgccggcccgcggtatc
ggcgagaagaccgttgaatgcctgcgccagctggcccgcgaacagggcctgtctatgtgg
gccgcgctgcaccaggcggtcggcaccaaggcggtgtccgggcgtgccgccagcgcgctg
aacggcttcgtcgagctggtcgacaccctggcgctgaaggtcgagaaactgccgctgcac
agcatggcgcagctggtcatcgaggaatccgggctactcgcctaccaccgcgacgaaaag
ggcgagaaggcccaggcgcgggtggaaaacctcgaggaactggtctccgccgcgcgcgcc
ttcgacaactacagcgaagaggacgacgacatccagtcgccgctggccgccttcctcgac
cacgcctcgctggaggccggcgagcaacaggccggcgatcacgaggacagcgtgcagctg
atgaccctgcacagcgccaagggcctggagttcccgctggtgttcctggtcggcatggaa
gaaggcctgttcccgcacaagatgagcctggaggagtccggccgtctggaagaggaacgc
cgcctggcctacgtcggcatcacccgcgccatgcagcagctggtgatcacctacgccgaa
acgcgccggctgtacggcagcgagacctacaacaaggtctcgcgcttcgtccgcgagatt
ccgccagcgctggtgcaggaagtgcgtctgaacaacacggtgacgcgctcgttcagcggc
aagagcatgagcggctcctcgctgttcgacggcgccggcgtgccggaaacaccgttcaac
ctcggccagcgcgtgcgccattcgctgttcggcgaaggcaccatcctcaacttcgaaggc
tccggcgcccaggcgcgggtgcaggtgaatttcgaggacgagggcagcaaatggctgatg
ctcagctacgcaaaacttgaagccctgtga
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