Pseudonocardia sp. EC080625-04: FRP1_24830
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Entry
FRP1_24830 CDS
T04054
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psee
Pseudonocardia sp. EC080625-04
Pathway
psee03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FRP1_24830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psee03400
]
FRP1_24830
Enzymes [BR:
psee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FRP1_24830
DNA repair and recombination proteins [BR:
psee03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FRP1_24830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ALE75331
LinkDB
All DBs
Position
complement(5333740..5334678)
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AA seq
312 aa
AA seq
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MLPMLATPGPLPTGPGWSFEVKWDGMRVLASVTEGDDGRALVLRTRSGRDVTANFPELAE
LAGAAPDVVLDGEVVLLDAGVPSFAALAHRMQGVVGAAAAERRPVTFMVFDVLRLYGVSL
LDRPLSERRATLERLDLGALAHVEASPLYPDGASLLAVTAERGLEGVVAKKESSVYRPGR
RSPDWVKVAHRHSQSCVVGGRRPEKGSGSRIGPLLLGVPGPDGLEFAGRVGSGLAGDAVQ
QLLTERLGPLTAESSPFAQTLPRLDAAGATWCTPRVVVEVAHLGWTAAGRLRQPVFRGIR
DDVDPTGVQREP
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
gtgttgcccatgctcgccacccccggaccgctcccgaccggtcccggctggtcgttcgag
gtcaagtgggacggcatgcgcgtgctggcatcggtcaccgagggtgacgacggccgggca
ctcgtcctgcgtacccgttccggccgggacgtcacggcgaacttcccggaactcgccgag
ctcgccggtgcggcccccgacgtcgtgctcgacggggaggtcgtcctgctcgacgccggc
gtccccagcttcgccgcgctcgcccaccgcatgcagggcgtcgtcggcgccgccgccgcg
gagcgccgccccgtcaccttcatggtgttcgacgttctgcggctctacggggtgtcgctc
ctcgaccggccgctgtccgaacggcgggccacgctggagcggctcgacctgggcgcgctc
gcgcacgtggaggcgtcgccgctgtacccggacggggcgtcgttgctggcggtgaccgcc
gagcgcgggctggagggcgttgtcgcgaagaaggagtcgtcggtgtaccggccgggccgg
cgcagcccggactgggtgaaggtcgcgcaccggcactcgcagagctgcgtggtcggcggg
cggcgcccggagaaggggagcggcagccggatcgggccactgctgctcggcgtccccggc
ccggacgggctggagttcgccgggcgggtcgggtccggtctcgccggtgacgcggtgcaa
cagctcctcaccgagcggctcggcccgctgacggcggagtcgtcaccgttcgcgcagacc
ctgccccggctcgacgcggccggggccacctggtgcacgccacgcgtcgtcgtggaggtc
gcgcacctcggctggacggcggccggccggctgcgccagccggtgttccgggggatccgc
gacgacgtcgaccccaccggggtgcaacgggagccgtga
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