KEGG   Pseudoflavitalea sp. 5GH32-13: D3H65_02285Help
Entry
D3H65_02285       CDS       T05640                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pseg  Pseudoflavitalea sp. 5GH32-13
Pathway
pseg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pseg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    D3H65_02285 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pseg03400]
    D3H65_02285 (ligD)
Enzymes [BR:pseg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     D3H65_02285 (ligD)
DNA repair and recombination proteins [BR:pseg03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     D3H65_02285 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 mRNA_cap_enzyme DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AXY72868
UniProt: A0A3B7MEU9
LinkDB All DBs
Position
complement(609586..612273)
Genome map
AA seq 895 aa AA seqDB search
MALTTYRKKRSFNKTPEPTGGKSSGKALRFVIQKHDASRLHYDFRLEMDGVLKSWAVPKG
PSTNPEDKRLAMMVEDHPYDYRSFEGIIPEGNYGAGTVIVWDEGTYEPLEPSGDKKKDEK
ALLKQLKAGSLKFSLSGHKLQGEFALVRLKNAENNAWLLIKHRDQYAKATDVTRKVRSVV
SDKTLEEVAKTSHNIYGQSKAAAPKKASKAATTTPKKAVKKTAPRKAARKKKDVAALEEA
PKKAFPKNIQPMLGTLVSEPFDQPGWLYEIKWDGYRALALCNKGKVELLSRNQKSFNEKF
YPVYKAVKDWQLDAVIDGEICVVSDKGISHFGSLQNWRSEADGELVYYVFDILWLDGHDL
TGLPLVKRRDLLRPLVPSSGIIRYSEAFESSATEFLAAASKMGMEGIMAKKADSVYLPGE
RTRDWLKLKANKRHEVVIGGFTNNEDSPKLFSALLVGLYDGKRLNYTGKIGTGFNDKMQR
EMMKQFKPLITTKCPFTELPDVNKPSRFRPNPPHATVTWLKPKLVGEVSYAEMTSDGVMR
HPSFEGMREDKKASAVVAETAVEVKEVTKRGRKDPATKLLKQGGKQERKTLLNPSEATQV
RAINGHELSFTNLNKIFWPKEKYTKRDMLNYYYQVAPYILPYLVNRPQSLNRYPNGINGK
SFYQKDITGKAPAWIKQFPYHTSEGEDKNFMVPTNEAGLLWMANLGAIEMNPWNSTIDKP
EHPDWCCLDLDPDKGNTFEQVIQTARVVKQVLDQLGIEGYPKTSGSTGIHIYIPLGAKYT
YDECQLFGKLIATHVREQLPQFTSIERLTRNRKGKLYIDYLQNRPKATLAAAYSLRPKPG
ATVSMPLHWDEVKKGLQLQHFTLANAMERIKREGDLFKPVLGKGVNIARVLKQLQ
NT seq 2688 nt NT seq  +upstreamnt  +downstreamnt
atggctttaactacctaccgcaaaaaacgctcctttaacaaaacaccggaacctaccggt
ggcaagtcatccggcaaagctttacgatttgtaatacaaaagcatgatgcatcccgcctg
cattatgatttccgcctggagatggacggtgtattgaaaagttgggcggtccccaagggg
ccttccaccaatcccgaagacaaaagactggccatgatggtagaagaccatccctatgat
taccgcagttttgagggcattatccccgaaggtaattatggggccggcacggtgatcgta
tgggatgaaggcacctatgaacccctcgaacccagcggcgataaaaagaaagatgaaaaa
gcgttgctcaaacaactcaaagcaggctcgctcaaattcagtttatcaggccataaacta
cagggtgaatttgcgctcgtacgattaaaaaatgcagagaacaacgcctggctactcatc
aaacaccgggatcagtacgccaaagcaacggatgtaaccaggaaagtacggtctgttgta
tctgataaaacccttgaagaagtggcaaagaccagtcataatatatacggtcaatcaaag
gctgccgctcctaaaaaagcttccaaagccgctaccaccacaccgaaaaaagcagtaaaa
aagacagcaccgcgcaaggcggcacgaaaaaaaaaagacgtagcagcactggaggaagca
cctaaaaaagcatttcccaaaaacattcaacccatgctgggcaccctcgtcagcgaacct
tttgatcaaccaggctggttgtatgagatcaaatgggatggctaccgggccctggccctt
tgtaataaaggcaaggtggaactactctcccgcaaccagaaatcattcaatgaaaaattc
tatcctgtatacaaggcggtaaaggactggcagctcgatgcagtcatagacggagagatc
tgcgtggtcagtgacaaaggcatttcccattttgggtcgctgcagaactggcgaagtgaa
gctgatggcgaactggtatattatgtatttgacatcctttggctggatggccacgacctc
accggactgccactggtaaagcgacgtgatctgctacgaccattggtaccatcttcgggc
attatccgctacagcgaagccttcgaaagctcggccacagagttcctggcagcagcttct
aaaatgggaatggaaggcataatggccaagaaagccgatagtgtttacctgccgggagaa
cgtacccgcgactggttaaagctgaaagccaataaaagacatgaagtagtgatcggcgga
ttcaccaacaatgaggattcacccaaactgttcagtgcattgctggtagggctgtatgac
gggaaaagattgaactataccggcaaaataggtactggtttcaatgacaagatgcaacgg
gaaatgatgaaacagtttaagccccttattaccaccaaatgcccttttactgaactgcca
gacgtcaacaagccttcccgcttccggcccaatcctcctcatgccaccgttacctggcta
aaacccaaactggtgggagaagtgagttatgctgaaatgaccagcgacggagtgatgcgc
catcccagttttgaaggtatgcgggaagacaaaaaagccagcgctgtagtagctgaaact
gctgtggaggtaaaggaagtgactaaaaggggcaggaaagatccggcaaccaaactattg
aagcagggaggcaaacaggaaaggaagaccctgctgaacccttctgaagcaacgcaggtg
agggctatcaatggccatgaactttcctttaccaacctcaataagatattctggccaaag
gaaaaatataccaagcgagatatgctcaactactattaccaggtggcgccctatatactc
ccctacctggtaaaccggccccaatcattgaaccgataccccaatgggatcaatggaaaa
agcttttaccagaaggatataacaggcaaagcgcccgcatggatcaagcaatttccctat
cataccagtgagggggaagacaagaatttcatggtacctaccaatgaagcaggcctgttg
tggatggctaacctgggggccattgagatgaacccctggaacagcaccattgacaaaccg
gagcaccctgactggtgctgcctcgacctggaccccgacaaaggcaatacttttgaacag
gtgatacaaaccgcccgggtggtaaaacaggtgctggaccaactgggcattgaggggtac
cccaagacatccggctctaccggtattcatatctatatcccattgggcgcaaagtatacg
tatgacgaatgccagctatttggcaagctcatcgccacgcatgtacgggagcaattacca
cagtttaccagcatcgaaagactcacccgcaacaggaagggaaaactctatatcgactac
ctgcaaaatcgccccaaagccacgctggcagcggcttactcactgcgacccaaacccggc
gccacggtatcaatgcccctccattgggacgaagtaaagaagggtttacagctacaacat
ttcacacttgccaatgcaatggaacggatcaaaagagagggcgatctgttcaaaccagtg
ttgggtaaaggtgtcaatattgccagggtattgaagcaattacaatag

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