Pseudonocardia sp. HH130629-09: XF36_01135
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Entry
XF36_01135 CDS
T04082
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pseh
Pseudonocardia sp. HH130629-09
Pathway
pseh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pseh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XF36_01135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pseh03021
]
XF36_01135
03400 DNA repair and recombination proteins [BR:
pseh03400
]
XF36_01135
Enzymes [BR:
pseh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XF36_01135
Transcription machinery [BR:
pseh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XF36_01135
DNA repair and recombination proteins [BR:
pseh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XF36_01135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ALE81899
UniProt:
A0A0M3UA83
LinkDB
All DBs
Position
237625..241134
Genome browser
AA seq
1169 aa
AA seq
DB search
MAVSRAAATTSTLSASANPNYPGAPTRVTFAKIAQPLEVPDLLDLQIQSYEWLVGSEAWF
QRRIEAGDELPVSGLEEILTEISPIEDFSGSMSLSFSDPRFDEVKASVEECRDKDMTYGA
PLFVTAEFTNNTTGEIKSQTVFMGEFPVMTDKGTFIINGTERVVVSQLVRSPGVYFDHAI
DKTTEKDVYSVKIIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTAEQIGER
FGFSETIMTTLEKDNTAGQDEALLDIYRKLRPGEPPTRESAQALLENLFFKDKRYDMAKV
GRYKANKKLGLDIDNSVGTLTEEDVATTIEYLVRLHAGETTMTVGSGDSAREIPVETDDI
DHFGNRRLRTVGELIQNQVRVGLSRTERVVRERMTTQDVEAITPQTLINTRPITAAIREF
FGTSQLSQFMDQHNPLAGLTHKRRLSALGPGGLSRERAGMEVRDVHPSHYGRMCPIETPE
GPNIGLIGSLASFARVNPFGFIETPYRKVVDGVVTSQIDYLTADEEDRFVVAQANAQLNE
DGSFADERVLVRRKGGEVDLISPSGVEYIDVSPRQMVSVATAMIPFLEHDDANRALMGAN
MQRQSVPLLRSESPLVGTGMELRAAVDAGDVVTAESAGVVEELCADYITVMDDEGQRQTY
RLNKFRRSNQGTCNNQKPIVDEGQRVEVGQVLADGPCTENGEMALGKNLLVAIMPWEGHN
YEDAIILSQRLVQDDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSEDVLADLDERGII
RIGAEVQPGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGENGKVIGI
RVFSRDDDDELAPGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFLPDG
TPVDIILNTHGVPRRMNIGQILETHLGWIAKSGWEIEGTPEWAAQMPEELYSVPADTNTA
TPVFDGAREHEITGLLGSTRPNRDGERMVGPDGKAQLLDGRSGEPYPFPVAVGYMYILKL
AHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKS
DDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDADDE
DLERAAANLGINLSSRPGSESMTVDDVVN
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
ttggctgtctcccgcgccgccgcgaccacctcgaccctctccgcttcggcgaacccgaac
taccccggcgcacccacccgggtcaccttcgcgaagatcgcccagccgttggaggtcccc
gaccttctcgacctgcagatccagtcctacgagtggctggtcggcagcgaggcatggttc
cagcgtcggatcgaggccggtgacgagctcccggtcagcggtctggaggagatcctcacc
gagatctcgccgatcgaggacttctccgggtcgatgtcgctgtccttctccgacccgcgc
ttcgacgaggtcaaggcctcggtcgaggagtgccgggacaaggacatgacctacggcgcc
ccgctgttcgtgacggcggagttcaccaacaacaccaccggtgagatcaagtcccagacg
gtcttcatgggtgagttccccgtgatgaccgacaagggcacgttcatcatcaacggcacc
gagcgcgtcgtcgtgtcgcagctcgtccgttcgccgggtgtctacttcgaccacgcgatc
gacaagacgaccgagaaggacgtctactcggtcaagatcatcccgagccggggtgcgtgg
ctggagttcgacgtcgacaagcgcgacaccgtcggtgtccgcatcgaccgcaagcgccgc
cagccggtcaccgtgctgctgaaggccctgggctggaccgccgagcagatcggtgagcgt
ttcgggttctccgagacgatcatgacgacgctcgagaaggacaacaccgcgggccaggac
gaggcgctgctcgacatctaccgcaagctgcgccccggcgagccgccgacgcgcgagtcg
gcccaggcgctcctggagaacctgttcttcaaggacaagcgctacgacatggccaaggtc
ggtcgctacaaggccaacaagaagctcggtctcgacatcgacaactcggtcggcacgctg
accgaggaggacgtcgccaccaccatcgagtacctcgtccggctgcacgccggcgagacc
acgatgaccgtgggttccggtgactccgcgcgggagatcccggtcgagaccgatgacatc
gaccacttcggcaaccggcgcctgcgcaccgtcggcgagctgatccagaaccaggtccgg
gtcggtctgtcccgcaccgagcgggtcgtccgcgagcggatgaccacccaggacgtcgag
gccatcacgccgcagaccctgatcaacacccggccgatcacggccgcgatccgggagttc
ttcggcacctcgcagctgtcgcagttcatggaccagcacaacccgctggccggactgacc
cacaagcgtcgactgtcggcgctcggcccgggcggtctgtcccgtgagcgcgccggcatg
gaggtccgcgacgtccacccgtcgcactacggccgcatgtgcccgatcgagacccccgag
ggtccgaacatcggtctgatcggctcgctggcctccttcgcgcgggtcaacccgttcggc
ttcatcgagacgccgtaccgcaaggtcgtcgacggtgtcgtcacctcgcagatcgactac
ctgaccgccgacgaggaggaccgcttcgtcgtcgcccaggcgaacgcccagctcaacgag
gacggttccttcgccgacgagcgcgtgctggtccgccgcaagggcggcgaggtcgacctg
atctcgccctcgggcgtggagtacatcgacgtctcgccgcgccagatggtgtcggtcgcg
acggcgatgatcccgttcctcgagcacgacgacgcgaaccgcgcgctgatgggcgcgaac
atgcagcgccagtccgtgccgctgctgcgctcggagtcgccgctggtcggtaccggcatg
gagctgcgtgccgccgtcgacgccggtgacgtcgtcaccgccgagtccgccggtgtcgtc
gaggagctgtgcgccgactacatcaccgtcatggacgacgagggccagcgtcagacctac
cgtctgaacaagttccgccgctcgaaccagggcacctgcaacaaccagaagcccatcgtc
gacgaggggcagcgggtcgaggtgggccaggtgctcgccgacggtccctgcaccgagaac
ggtgagatggcgctgggcaagaacctgctcgtggcgatcatgccgtgggagggccacaac
tacgaggacgcgatcatcctgtcgcagcgcctcgtgcaggacgacgtgctcacctcgatc
cacatcgaggagcacgagatcgacgcgcgcgacacgaagctgggcgccgaggagatcacc
cgggacatcccgaacgtctccgaggacgtgctggccgacctcgacgagcgcggcatcatc
cggatcggcgccgaggtccagcccggcgacatcctggtcggcaaggtcacgcccaagggc
gagaccgagctgaccccggaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgc
gaggtccgcgacacctcgctgaaggtcccgcacggcgagaacggcaaggtcatcggcatc
cgggtcttctcccgcgacgacgacgacgagctggccccgggcgtcaacgagctggtccgc
gtctacgtggcccagaagcgcaagatctccgacggcgacaagctcgccggccggcacggc
aacaagggcgtcatcggcaagatcctcccgcaggaggacatgccgttcctcccggacggc
acgccggtcgacatcatcctgaacacccacggtgtgccgcgtcgtatgaacatcggccag
atcctggagacccacctcgggtggatcgccaagtcgggctgggagatcgagggcaccccg
gagtgggcggcgcagatgcccgaggagctctactcggtgcccgccgacacgaacaccgcg
acgccggtgttcgacggtgcgcgcgagcacgagatcacgggtctgctcggctcgacccgc
cccaaccgggacggcgagcgcatggtcggtccggacggcaaggcacagctgctcgacggc
cgctccggtgagccgtacccgttcccggtcgcggtcgggtacatgtacatcctgaagctg
gcgcacctggtggacgacaagatccacgcccggtcgaccggcccctactcgatgatcacc
cagcagccgctgggcggtaaggcgcagttcggtggccagcgcttcggtgagatggagtgc
tgggcgatgcaggcgtacggcgcggcctacaccctgcaggagctgctgacgatcaagtcc
gacgacgtcgtgggtcgcgtgaaggtctacgaggcgatcgtcaagggcgagaacatcccg
gagccggggatccccgagtcgttcaaggtgctcctcaaggagctgcagtcgctctgcctg
aacgtcgaggtgctctccagcgacggtgcggcgatcgagatgcgggacgccgacgacgag
gacctcgagcgtgccgcggcgaacctgggcatcaacctgtccagccgcccgggctcggag
tcgatgaccgtcgacgacgtcgtcaactga
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