Pseudonocardia sp. HH130629-09: XF36_12025
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Entry
XF36_12025 CDS
T04082
Name
(GenBank) heavy metal transporter
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pseh
Pseudonocardia sp. HH130629-09
Pathway
pseh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pseh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XF36_12025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseh03019
]
XF36_12025
03009 Ribosome biogenesis [BR:
pseh03009
]
XF36_12025
Enzymes [BR:
pseh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XF36_12025
Messenger RNA biogenesis [BR:
pseh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XF36_12025
Ribosome biogenesis [BR:
pseh03009
]
Prokaryotic type
rRNA helicases
XF36_12025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALE83785
UniProt:
A0A0M3UB81
LinkDB
All DBs
Position
complement(2616560..2618257)
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AA seq
565 aa
AA seq
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MGLAPQLLDTLEKLGYASPSPIQAAAIGPLIAGRDLLGQAATGTGKTAAFSLPMLQRLAD
GRTSRSRGAKPFGLVLAPTRELAMQVGDAVSKYGAALGASVACVYGGAPIGPQLGQLRRG
VDIVVATPGRAIDLVNRGALALDAIEVAVLDEADEMLDMGFVEDIETILGATPRGRQTVL
FSATMPGRIQSLARTHLSDPADIRIKKEATPEGEAPRVRQTAYHVPRSHVTVALGRVLEM
EQPTAAIVFCRTRADVDAVTETLTARGLRAEALHGGMDQEHRTRVVERLRAGRTELLVAT
DVAARGLDIDSLTHVVNHDVPSSPESYVHRIGRVGRAGREGVAITLVTPGSVRHLRNIER
LIGASVPSAPVPSPEDLRTVRLARTALALREQAGQDADTPPQDGVEQLVVELARDHDLAS
IAAAAIRIARAGNSVPDDEIEIPQVRSRGGRDSGPGDRGPRRDRDGRPTGARGQGARPPK
AGATRLFVSAGRASGVRPQDIVGALANESRLSGRDIGAIQIHERHSLVEVPEHAADDVLR
SLRGATTLKGRKANVRRDRDNAGAR
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
ctgggcctcgcgccccagctgctcgacaccctcgagaagctgggctacgcctcgccgagc
ccgatccaggccgccgcgatcggcccgctgatcgccgggcgcgacctgctgggccaggcc
gccaccggtaccggcaagaccgccgcgttctcgctgccgatgctgcagcgcctcgccgac
ggccgcacctcccgctcccgcggcgccaagcccttcggcctggtgctcgccccgacccgt
gagctggccatgcaggtcggcgacgcggtctccaagtacggcgccgcgctcggtgcctcg
gtcgcctgcgtctacggcggcgcgcccatcggcccccagctgggccagctccgtcgcggt
gtcgacatcgtcgtcgccaccccgggccgggcgatcgacctggtcaaccgcggtgccctc
gcgctggacgcgatcgaggtcgccgtcctggacgaggccgacgagatgctcgacatgggc
ttcgtcgaggacatcgagacgatcctcggcgccacgccgcggggccgccagaccgtgctg
ttctccgcgaccatgccgggccgcatccagagcctcgcgcggacccacctgagcgacccg
gccgacatccggatcaagaaggaggccacgcccgagggcgaggccccgcgggtccgccag
accgcctaccacgtgccgcgcagccacgtcaccgtcgcgctgggccgggtgctcgagatg
gagcagccgaccgcggcgatcgtgttctgccgcacccgcgccgacgtcgacgccgtcacc
gagacgctgaccgcgcgcgggctgcgcgccgaggcgctacacggcggcatggaccaggag
caccgcacccgggtcgtcgagcgcctgcgcgccggccgcaccgagctgctggtcgccacc
gacgtcgcggcccgtggtctcgacatcgactcgctcacccacgtggtcaaccacgacgtc
ccgtcgtcgccggagtcctacgtgcaccgcatcggccgggtcggccgcgcgggccgcgag
ggcgtcgcgatcaccctggtcaccccggggtcggtgcggcacctgcgcaacatcgagcgc
ctcatcggtgcgtcggtgcccagcgcgccggtgccctcgccggaggacctgcgcaccgtg
cggctcgcccgcaccgcgctggccctgcgcgagcaggccggtcaggacgccgacaccccg
ccgcaggacggcgtggagcagctcgtcgtcgagctggcccgcgaccacgacctcgcctcg
atcgccgccgcggcgatccggatcgcccgcgccggcaactcggtgccggacgacgagatc
gagatcccgcaggtccgctcgcgcggtggccgcgacagcggccccggtgaccgtggcccg
cgccgcgaccgcgacggtcgtccgaccggtgcccgcggtcagggtgcccgtccgccgaag
gccggtgcgacacgcctgttcgtctcggcgggccgtgcctccggtgtgcgcccgcaggac
atcgtgggtgcgctggcgaacgagtcccggctgtccggccgcgacatcggcgccatccag
atccacgagcgccactcgctggtcgaggtgcccgagcacgccgcggacgacgtgctgcgc
tcgctgcgcggtgcgacgacgctgaagggccgcaaggccaacgtgcgtcgcgaccgggac
aacgccggcgcccgctag
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