Pseudodesulfovibrio cashew: GM415_14890
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Entry
GM415_14890 CDS
T06353
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psel
Pseudodesulfovibrio cashew
Pathway
psel03030
DNA replication
psel03410
Base excision repair
psel03420
Nucleotide excision repair
psel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GM415_14890 (ligA)
03410 Base excision repair
GM415_14890 (ligA)
03420 Nucleotide excision repair
GM415_14890 (ligA)
03430 Mismatch repair
GM415_14890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psel03032
]
GM415_14890 (ligA)
03400 DNA repair and recombination proteins [BR:
psel03400
]
GM415_14890 (ligA)
Enzymes [BR:
psel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GM415_14890 (ligA)
DNA replication proteins [BR:
psel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GM415_14890 (ligA)
DNA repair and recombination proteins [BR:
psel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GM415_14890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GM415_14890 (ligA)
MMR (mismatch excision repair)
DNA ligase
GM415_14890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GM415_14890 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
HHH
DNA_ligase_ZBD
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QGY41354
UniProt:
A0A6I6JUH0
LinkDB
All DBs
Position
complement(3253044..3255077)
Genome browser
AA seq
677 aa
AA seq
DB search
MASSDFTERAAYLRETLEHHNYLYYVLDAPEITDSQYDELFRELAALEAAHPELDDPNSP
TRRVGGEPAAGFTPYEHAVRMYSLDNAMKVEDWYAFTERVAKGLGRADVEYWTDPKMDGL
ALEVIYEKGRYVRAATRGDGQTGEDVTHNMRTVMNLPMNLRGGNVPDLLEVRGEVVMANE
DFAALNERQELAGEKVFANPRNAAAGSIRQLDPKVAASRPLRFLAYGVGRVEWGGPLFSW
TSQKEIMDGLGAFGFSIPPEARLCGSKQEVADYFLELGERRAALPFEIDGVVAKVNNLEM
QRALGFTSRAPRWALALKFPAHQAKTVLKDIRIQVGRTGVLTPVAELEPVPLAGVTVSNA
TLHNKGYIRERDFRIGDTVLIQRAGDVIPQVLSVDLEERPSHAEPYVFPMTCPVCESDAY
EDGEAVRCSNPACPAKTVQQIIHFVSKAGLDMEGVGRKWVERLAVDGVLDTPADLFSLKK
TDLLRYEGMGDKSADNFITAIAKAREEAPLWRLVAGLGIRHVGEQTARTLAAHYADLDAI
GAATQDELQDLEDVGPKVAESVHRFFQSEPTRKLLAEFKMVGFWPVGSIDTETEEDAAKQ
PLAGKVFIFTGSLPDMTRTQAQALVEERGGSAVKSISKKVDFVVAGEKAGSKIAKAEKLG
LTVIDFDGFMALLNESE
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatctgattttaccgaacgcgcggcgtatctgcgcgaaactctcgaacatcac
aattatctctattacgttctggacgcgcccgagattacggacagccaatacgacgagttg
tttcgggaactggcggcgctggaagcggcccacccggaactggacgatcccaattccccc
acccgacgcgtaggcggtgagcctgccgcagggttcacgccctatgagcatgccgtgcgt
atgtacagcctggacaacgccatgaaggtggaggactggtatgccttcaccgagcgcgtt
gccaaaggcctcggtcgtgcggacgtcgagtactggaccgacccgaagatggatggcctg
gccttggaggttatttacgagaaggggcgctacgtccgggcggcaacgcgcggcgatgga
caaaccggcgaggacgtgacccataatatgcgcacggtcatgaacctgcccatgaacctg
cgcgggggcaacgtcccagacctgttggaggtccggggcgaagtggtcatggccaacgag
gatttcgctgccttgaacgagcgtcaggaattggccggggaaaaggtgtttgcaaatccc
cgcaacgctgctgccgggtccattcgtcaacttgatcccaaggtcgctgcgtccagacct
cttcgctttctggcctacggcgtcggtcgagttgagtggggcgggccgctgtttagctgg
acctcgcaaaaggagatcatggatgggcttggagcattcggcttttccatcccgcccgag
gcccggctgtgcggttccaaacaggaggtcgccgactattttctcgaacttggggaacga
cgcgccgctttgccgtttgaaattgacggtgtcgttgccaaggtgaacaacctggagatg
cagcgggcgctcggctttacgtccagggcaccgcgttgggcattggccctgaagtttcct
gcgcaccaggccaagacggtgctcaaggacattcgtatccaggtcgggcgcaccggtgtg
ctgacccctgtggcggaactggagccggttcccctggccggagtgacggtgagcaacgcc
accctgcacaacaagggctacatccgggagcgggattttcgcataggcgacaccgtgctc
atccagcgggccggggatgtcattccgcaggtcctgtccgtggacctggaggaacggccc
tcccatgccgagccctacgtctttcccatgacctgtcccgtttgtgagagcgatgcctat
gaggacggcgaggccgtgcgctgttccaatccggcgtgcccggccaagaccgtacagcag
atcatccatttcgtgtccaaggccgggctcgacatggaaggggtgggccgcaagtgggtg
gagcgtctggccgtggacggtgtgcttgatacgcccgccgatctcttttctttgaagaag
accgatctgcttcgttatgaaggcatgggagacaagtctgctgataactttatcacagcc
attgccaaggcccgggaagaggctccgctctggcggcttgtcgccggattgggcattcgc
cacgtgggcgagcagacggcgcgcacccttgccgcccattacgccgatctggacgccatt
ggtgcggctacacaagacgagttgcaggatctggaagatgtggggcccaaagtggccgaa
agcgttcatcgctttttccagagtgagccgaccagaaagcttctagccgagttcaagatg
gtgggcttttggccggtgggctccatcgatacggaaacggaagaggacgcggcaaagcag
ccgcttgcaggaaaggttttcatctttacagggagtttgccggatatgacgcgcacgcag
gcccaggctctggttgaggagcggggcggcagcgcggtcaaatccatatccaaaaaggtg
gattttgtggtagccggagaaaaggctggctccaagatcgccaaggcggagaaactcgga
ctgaccgtgatcgattttgacgggttcatggctttgcttaatgaatccgaataa
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