KEGG   Pseudomonas sp. MRSN12121: TO66_14815Help
Entry
TO66_14815        CDS       T03702                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psem  Pseudomonas sp. MRSN12121
Pathway
psem03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    TO66_14815 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psem03400]
    TO66_14815 (ligD)
Enzymes [BR:psem01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TO66_14815 (ligD)
DNA repair and recombination proteins [BR:psem03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     TO66_14815 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S Tudor_3
Motif
Other DBs
NCBI-ProteinID: AJO78507
UniProt: A0A0C5EKG0
LinkDB All DBs
Position
complement(3266648..3269245)
Genome map
AA seq 865 aa AA seqDB search
MAKPLSEYQRKRNFAITSEPAADPPAARTGKAASLRFVIQKHAARNLHYDFRLELGGTLK
SWAVPKGPSLDPTHKRLAVHVEDHPLGYGQFEGSIPAGQYGAGEVIVWDHGVWQPHDDPE
AGYRAGKLKFTLIGEKLGGDWALVRTHLRGSGDKEQWLLIKEQDAQARPSAEYDVVRALP
ESVLSGATVGEGNSRPAKPAAKKPSRQTPGKTPEQAPERTPQKASQKAPKRSAIALPEHL
TPQLATLVEKAPGGDWRYEIKFDGYRILARIDASGVRLLTRNGHDWTARLPLQAKALAAL
KLKDSWLDGEVVVLNDKGLPDFQALQNAFDIGRSLDIIYYLFDAPFLRGEDLRETPLEAR
RKALKEALEGNSSKLLRFSEAFAAHHNDILESACALSLEGVIGKRAGSFYVSRRSADWIK
LKCRLRQEFVIIGHTPPQGSRSGFGALLLGVHEDGRLRYAGRVGTGFNQQTLKQLHERLQ
GLARASSPLDTPLSAAQARGARWVEPQLVAEVEFAEWTREQVVRQAAFIALRSDKPASEI
VREQPLPPKALAARSSGTSPEPRKHNVGASVAGVKITHPERVIDPQSGTTKLQLAQFYAS
IEAQILPYLRDRPVSLLRAPEGVEGEQFFQKHAEHMAIPHIRHLDPALDPGHARLMEIDS
GPALIGAVQMGTVELHTWGATHDRIDTPDLFVLDLDPDPALPWKSMLEATHLTLSVLDEL
GLQAFLKTSGGKGMHLVVPLARKAGWDSVKLFAKAIAQFMAHQLPERITATMGPKNRVGK
IFVDYLRNARGASTVAAYSVRARPGLPVSVPIARDELDDIRHAQQWNVANLQQRLEGLGE
DPWHGYAHRQRISAKMWRQLGMDPP
NT seq 2598 nt NT seq  +upstreamnt  +downstreamnt
atggctaaacccttgagtgaataccagcgcaagcgcaacttcgccatcacctcggaaccc
gctgccgatccgcccgccgcgcgcaccggcaaggccgcctccctgcgcttcgtgatccag
aaacatgcggcgcgcaacctgcactacgactttcgcctggaactgggcggcaccctgaaa
agctgggccgtgcccaagggcccgagcctggacccgacacacaagcgcctggcggtacac
gtcgaagaccatcccctgggctacggccaattcgagggcagcatccccgccggacaatac
ggcgccggcgaggtgatcgtctgggaccacggcgtctggcagccccacgacgaccccgag
gccggctaccgggccggcaagctcaagttcaccctgatcggcgaaaagctcggcggcgac
tgggccctggtgcgcacccatttgcgcggcagcggcgacaaggaacaatggctgctgatc
aaggagcaggacgcccaggcgcggccgagcgccgagtacgacgtggtccgagccctgccc
gaaagcgtgctcagcggcgccacggtcggcgaaggcaactcccggcccgccaagccggcg
gcgaaaaaaccgtcgcgacagacaccgggcaaaacgccggagcaagctccggagagaacc
ccgcaaaaagcctcgcagaaagccccgaaacgctcggccatcgccctgcccgagcacctc
acgccgcaactggcgaccctggtggaaaaggcccccggcggcgactggcgctacgagatc
aagttcgacggctaccggatcctcgcccgcatcgacgccagcggcgtgcgcctgctgacc
cgcaacggccacgactggaccgcgcgcctgcccttgcaagccaaggccctggccgcgctg
aagctcaaggacagctggctggacggcgaagtggtggtgctcaacgacaagggcctgccg
gatttccaggccctgcagaacgccttcgatatcggccgcagcctggacatcatctattac
ctgttcgacgcgccgttcctgcgcggcgaagacctgcgcgaaacgcccctggaagcgcgg
cgcaaggcgctcaaggaagcgctggagggcaattcgagcaagcttctgcgcttctccgag
gcctttgccgcccaccacaacgacatcctcgaaagcgcttgcgccctgtcgctggagggg
gtcatcggcaagcgcgccggcagcttctacgtatcgcgccgcagcgccgactggatcaag
ctcaagtgccggctacgccaggagttcgtgatcattggccacaccccgccgcaaggttcg
cgcagcggcttcggcgccctgctgctgggggtccatgaggatggccggctgcggtacgcc
ggccgggtgggcaccggtttcaaccagcagaccctgaaacagctgcacgaacgcctgcaa
gggctcgcgcgtgcctcctcgccgctggacacgccgctgagcgcggcccaggcccgcggc
gcgcgctgggtcgagccgcagctggtggccgaagtcgagttcgccgagtggacccgcgaa
caggtggtgcgccaggcggcgttcatcgccttgcgcagcgacaagccggccagcgagatc
gtccgcgaacagccgctgccgcccaaggcgcttgccgcccgcagcagcggcaccagcccc
gagccgcgcaagcacaacgtcggcgccagcgtggccggggtgaaaatcacccatcccgaa
cgcgtcatcgacccgcagtccggcaccaccaagctgcaactggcgcagttctacgccagc
atcgaggcacagatcctgccgtacctgcgcgaccggcccgtgtcgttgctacgcgcgccc
gaaggggtggaaggcgagcagttcttccagaaacacgccgaacacatggccattccccat
atccggcacctggacccggcgctggatcccggccacgcccggctgatggaaatcgacagc
ggcccggcgctgatcggagcggtgcagatgggcaccgtcgagctgcacacctggggcgcg
acccacgaccggatcgataccccggacctgttcgtcctcgacctcgacccggacccggcc
ctgccctggaaaagcatgctggaggccacccacctgaccctttcggtactcgacgagctg
ggcttgcaggcgttcctcaagaccagcggcggcaagggcatgcacctggtcgtgccgctg
gcgcgcaaggccggctgggacagcgtcaagctgttcgccaaggcgatcgcgcagttcatg
gcgcaccagttgccggaacgcatcaccgccaccatgggcccgaagaatcgggtcgggaag
attttcgtcgattacctgcgcaacgcccgcggcgccagcaccgtagccgcctattcggta
cgggcgcgcccgggcctgccggtctcggtgccgatcgcgcgcgacgaactggatgacatc
cgccacgcccagcaatggaacgtggcgaacctgcaacagcgcctggaggggctgggggag
gatccgtggcacggctacgcccatcggcaacggatcagcgcgaagatgtggcggcagtta
gggatggacccgccttaa

DBGET integrated database retrieval system