Pseudomonas sp. MRSN12121: TO66_14815
Entry
TO66_14815 CDS
T03702
Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psem
Pseudomonas sp. MRSN12121
Pathway
psem03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TO66_14815 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psem03400
]
TO66_14815 (ligD)
Enzymes [BR:
psem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TO66_14815 (ligD)
DNA repair and recombination proteins [BR:
psem03400
]
Prokaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TO66_14815 (ligD)
SSDB
Motif
Pfam:
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Other DBs
NCBI-ProteinID:
AJO78507
UniProt:
A0A0C5EKG0
LinkDB
Position
complement(3266648..3269245)
AA seq
865 aa
MAKPLSEYQRKRNFAITSEPAADPPAARTGKAASLRFVIQKHAARNLHYDFRLELGGTLK
SWAVPKGPSLDPTHKRLAVHVEDHPLGYGQFEGSIPAGQYGAGEVIVWDHGVWQPHDDPE
AGYRAGKLKFTLIGEKLGGDWALVRTHLRGSGDKEQWLLIKEQDAQARPSAEYDVVRALP
ESVLSGATVGEGNSRPAKPAAKKPSRQTPGKTPEQAPERTPQKASQKAPKRSAIALPEHL
TPQLATLVEKAPGGDWRYEIKFDGYRILARIDASGVRLLTRNGHDWTARLPLQAKALAAL
KLKDSWLDGEVVVLNDKGLPDFQALQNAFDIGRSLDIIYYLFDAPFLRGEDLRETPLEAR
RKALKEALEGNSSKLLRFSEAFAAHHNDILESACALSLEGVIGKRAGSFYVSRRSADWIK
LKCRLRQEFVIIGHTPPQGSRSGFGALLLGVHEDGRLRYAGRVGTGFNQQTLKQLHERLQ
GLARASSPLDTPLSAAQARGARWVEPQLVAEVEFAEWTREQVVRQAAFIALRSDKPASEI
VREQPLPPKALAARSSGTSPEPRKHNVGASVAGVKITHPERVIDPQSGTTKLQLAQFYAS
IEAQILPYLRDRPVSLLRAPEGVEGEQFFQKHAEHMAIPHIRHLDPALDPGHARLMEIDS
GPALIGAVQMGTVELHTWGATHDRIDTPDLFVLDLDPDPALPWKSMLEATHLTLSVLDEL
GLQAFLKTSGGKGMHLVVPLARKAGWDSVKLFAKAIAQFMAHQLPERITATMGPKNRVGK
IFVDYLRNARGASTVAAYSVRARPGLPVSVPIARDELDDIRHAQQWNVANLQQRLEGLGE
DPWHGYAHRQRISAKMWRQLGMDPP
NT seq
2598 nt
+upstream
nt +downstream
nt
atggctaaacccttgagtgaataccagcgcaagcgcaacttcgccatcacctcggaaccc
gctgccgatccgcccgccgcgcgcaccggcaaggccgcctccctgcgcttcgtgatccag
aaacatgcggcgcgcaacctgcactacgactttcgcctggaactgggcggcaccctgaaa
agctgggccgtgcccaagggcccgagcctggacccgacacacaagcgcctggcggtacac
gtcgaagaccatcccctgggctacggccaattcgagggcagcatccccgccggacaatac
ggcgccggcgaggtgatcgtctgggaccacggcgtctggcagccccacgacgaccccgag
gccggctaccgggccggcaagctcaagttcaccctgatcggcgaaaagctcggcggcgac
tgggccctggtgcgcacccatttgcgcggcagcggcgacaaggaacaatggctgctgatc
aaggagcaggacgcccaggcgcggccgagcgccgagtacgacgtggtccgagccctgccc
gaaagcgtgctcagcggcgccacggtcggcgaaggcaactcccggcccgccaagccggcg
gcgaaaaaaccgtcgcgacagacaccgggcaaaacgccggagcaagctccggagagaacc
ccgcaaaaagcctcgcagaaagccccgaaacgctcggccatcgccctgcccgagcacctc
acgccgcaactggcgaccctggtggaaaaggcccccggcggcgactggcgctacgagatc
aagttcgacggctaccggatcctcgcccgcatcgacgccagcggcgtgcgcctgctgacc
cgcaacggccacgactggaccgcgcgcctgcccttgcaagccaaggccctggccgcgctg
aagctcaaggacagctggctggacggcgaagtggtggtgctcaacgacaagggcctgccg
gatttccaggccctgcagaacgccttcgatatcggccgcagcctggacatcatctattac
ctgttcgacgcgccgttcctgcgcggcgaagacctgcgcgaaacgcccctggaagcgcgg
cgcaaggcgctcaaggaagcgctggagggcaattcgagcaagcttctgcgcttctccgag
gcctttgccgcccaccacaacgacatcctcgaaagcgcttgcgccctgtcgctggagggg
gtcatcggcaagcgcgccggcagcttctacgtatcgcgccgcagcgccgactggatcaag
ctcaagtgccggctacgccaggagttcgtgatcattggccacaccccgccgcaaggttcg
cgcagcggcttcggcgccctgctgctgggggtccatgaggatggccggctgcggtacgcc
ggccgggtgggcaccggtttcaaccagcagaccctgaaacagctgcacgaacgcctgcaa
gggctcgcgcgtgcctcctcgccgctggacacgccgctgagcgcggcccaggcccgcggc
gcgcgctgggtcgagccgcagctggtggccgaagtcgagttcgccgagtggacccgcgaa
caggtggtgcgccaggcggcgttcatcgccttgcgcagcgacaagccggccagcgagatc
gtccgcgaacagccgctgccgcccaaggcgcttgccgcccgcagcagcggcaccagcccc
gagccgcgcaagcacaacgtcggcgccagcgtggccggggtgaaaatcacccatcccgaa
cgcgtcatcgacccgcagtccggcaccaccaagctgcaactggcgcagttctacgccagc
atcgaggcacagatcctgccgtacctgcgcgaccggcccgtgtcgttgctacgcgcgccc
gaaggggtggaaggcgagcagttcttccagaaacacgccgaacacatggccattccccat
atccggcacctggacccggcgctggatcccggccacgcccggctgatggaaatcgacagc
ggcccggcgctgatcggagcggtgcagatgggcaccgtcgagctgcacacctggggcgcg
acccacgaccggatcgataccccggacctgttcgtcctcgacctcgacccggacccggcc
ctgccctggaaaagcatgctggaggccacccacctgaccctttcggtactcgacgagctg
ggcttgcaggcgttcctcaagaccagcggcggcaagggcatgcacctggtcgtgccgctg
gcgcgcaaggccggctgggacagcgtcaagctgttcgccaaggcgatcgcgcagttcatg
gcgcaccagttgccggaacgcatcaccgccaccatgggcccgaagaatcgggtcgggaag
attttcgtcgattacctgcgcaacgcccgcggcgccagcaccgtagccgcctattcggta
cgggcgcgcccgggcctgccggtctcggtgccgatcgcgcgcgacgaactggatgacatc
cgccacgcccagcaatggaacgtggcgaacctgcaacagcgcctggaggggctgggggag
gatccgtggcacggctacgcccatcggcaacggatcagcgcgaagatgtggcggcagtta
gggatggacccgccttaa
DBGET
integrated database retrieval system
