Pseudanabaena sp. ABRG5-3: ABRG53_1860
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Entry
ABRG53_1860 CDS
T05820
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pser
Pseudanabaena sp. ABRG5-3
Pathway
pser03030
DNA replication
pser03430
Mismatch repair
pser03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pser00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABRG53_1860 (dnaE)
03430 Mismatch repair
ABRG53_1860 (dnaE)
03440 Homologous recombination
ABRG53_1860 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pser03032
]
ABRG53_1860 (dnaE)
03400 DNA repair and recombination proteins [BR:
pser03400
]
ABRG53_1860 (dnaE)
Enzymes [BR:
pser01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABRG53_1860 (dnaE)
DNA replication proteins [BR:
pser03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABRG53_1860 (dnaE)
DNA repair and recombination proteins [BR:
pser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABRG53_1860 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
Intein_splicing
LAGLIDADG_3
Hint_2
Hom_end_hint
DUF6282
Motif
Other DBs
NCBI-ProteinID:
BBC24117
UniProt:
A0A2Z5WY81
LinkDB
All DBs
Position
complement(2057570..2061373)
Genome browser
AA seq
1267 aa
AA seq
DB search
MTGFVGLHVHTEYSLLDGASQIPDLVSRAADLGMPAIALTDHGVMYGAIELIKTCKSKGI
KPIIGNEMYVLNGDITKQYKKGDKDGKKYHQCVLAKDTQGYRNLVKLTSISHLQGFQGKG
IFARPCISKDYLLQYKEGLMLTSGCLAGEVPQAIMKGDPEEARRVAAWYKEHFGDDYYLE
IQDHGYPEDRIVNVEIFKIARELDIRVIATNDSHFTSCSDVEAHDALLCIQTGKLISDEK
RLRYSGMEYLKSYDEMKQLFRDHLEDELIEEALANTLHAANKVKPYDLMRDPRAADYPIP
EGHTADTYFEEVTWQGLLQRFNVKTHAEIPQNYQERLRFELGIIMQMGFATYFLVVWDYI
KYARDKKIPVGPGRGSAAGSLVAYSLGITNIDPIHHGLLFERFLNPERKSMPDIDTDFCI
DHRGELIEYVTERYGQERVAQIVTFNRLTSKAVLKDVGRVLDVSYSEADKMAKMIPVSRG
KPAKLKVMISEESPAPEFRDRYKNDAKVYEWLDMAMRIEGVNKSSGVHAAGVVISPFPLD
EVVPLQRSNEGQVVTQYTMEDLESLGLLKMDFLGLRNLTTIEHTSELIRSNQDPNFHIDA
IAPDMSTEANQKTYKLLEKGDLEGVFQLESSGMKQIVKDLKPSNIEDISSILALYRPGPL
DAGLIPKFINRKHGREAIEYQHQLLESILNNTYGVLCLAKGTLIARPDGTSTPIENIRKG
DIVLSSDGKLVWSAKVAKQWQSGIKSIVKITLSTGTEIFCTPEHRFLTPEGDQFAYELKP
LGNIKNAHVNGSIIYETWQISQNNKSLKPNEAYLLGLLVGDGHLTSSSPNIACSSEETAI
WVANLIAETWKGEPKHYFHTRCWYAYAKFNTQPQPTPLTIFMDKIYGGRTWKVNSKDKHL
PVDIVDYQECDRIDVLRGLWDSDGSYTQNPYFRSISKQLIKQVGQLLSSLKISYSLHSTH
VMITDIARFYQLIGEPRLPNKLIGEKKNNFVPIPSLRMKEELEEAIATTDRESRKTAKRS
LQAGVMVKPVRSQYATKITGWTEAYQKIYTETYLQDARPVFVISVEDCGTAECFDIEMVD
QSSPYFLANGVVTHNCYQEQIMKMAQELAGYSLGAADLLRRAMGKKKPEEMEKQRSIFLD
GCAKNGIRKEISNDLFDQMVLFAEYCLSYDTLVRTVEYGLIPIGKIVEHQIECQVYSVDE
HGFVYTQTIAQWHDRGNQEVFEYELENGDRIKATKDHKFMTTDGEMLAIDEIFERGLDLL
CYNSDQD
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgactggatttgttggattgcacgttcataccgagtacagcctgcttgatggggcaagc
caaattcctgatctagttagccgtgcggcggatttggggatgcctgcgatcgccttaacc
gatcatggtgtgatgtatggagcgatcgaactgatcaaaacttgcaaatctaagggaatt
aagccaatcattggcaatgaaatgtatgttctgaatggggatattactaagcaatataag
aaaggagacaaagacggcaaaaaatatcaccaatgcgttctcgctaaagatacacagggc
tatcgcaatctcgttaaattaacttccatttcccatttacaaggttttcaggggaaaggg
atttttgcgcgtccttgcatcagcaaagattatcttctgcaatacaaagaaggtttgatg
cttacttcgggatgtttagcaggagaagtcccacaggcgatcatgaagggagatcctgag
gaagcgcgacgggtagctgcttggtataaagaacattttggagatgattattatttagag
attcaagatcatggctatcctgaagatcggattgtgaatgtggagattttcaagattgca
agggaattggatattcgcgtaatcgccaccaatgactctcacttcacctcctgctccgat
gtggaagcccatgacgcactgctctgtatccaaacaggaaagctcatttctgatgagaag
cgtctgcgttatagcggtatggaatatctcaaatcctacgatgagatgaagcagttattt
cgcgatcatttggaggatgagttaattgaggaagccctcgcaaataccctccatgccgcc
aataaggtcaagccctatgacctgatgcgcgatccccgtgcggcggactatccgattcct
gaaggacatactgcggatacctattttgaagaagtgacatggcaaggcttactgcaaaga
tttaatgtcaaaacccatgccgagatccctcaaaattatcaagaacgcttgcgttttgaa
ttgggaattattatgcaaatgggctttgccacttactttctggtggtatgggactatatc
aaatatgccagagacaaaaagattcctgtcgggccaggtcgtggtagcgcagcaggttct
ctcgttgcttattctttgggaattaccaatatcgatcccattcatcatggacttctcttt
gagcgatttctcaatccagagcggaagtcgatgcctgatattgataccgacttctgcatc
gatcaccgtggtgaattaattgaatatgtaacagaacgctatggacaggaacgggtcgcc
cagattgtcaccttcaaccgtttgacttctaaggcagttctcaaagatgtgggacgggtg
ctagatgtgtcctacagcgaagccgataagatggcgaagatgattcccgtatcgcgtggc
aagcctgcgaagttaaaggtaatgatttctgaggagtcgcctgcacccgaatttcgcgat
cgctacaaaaatgatgccaaggtttacgaatggctcgatatggcaatgcggatcgaaggt
gtaaacaaaagctcaggcgttcacgcagcaggtgtggtgatttcaccattcccattggat
gaagttgtgccattgcagcgcagcaacgaaggtcaggtggtcacgcaatacacaatggaa
gatttggaatccctcggtctattgaaaatggactttttgggattgcggaacttaaccacg
attgagcatactagtgaattaattcgcagtaatcaagatcctaattttcatatcgatgcg
atcgcccccgatatgtccaccgaggcaaatcaaaaaacctataagctattagaaaaaggc
gatctcgaaggtgtcttccaattagaatcttcaggcatgaagcagatcgttaaggatctc
aagccttccaatattgaagatatttcctcgattctggcgctttatcgtcccggacctttg
gatgcaggactaatccctaagttcattaatcgtaagcatggacgagaagcgatcgaatat
cagcatcagttgctggaatctatattaaataacacctatggtgtgttatgtcttgcgaaa
ggaactttaattgctagacccgatggcacaagtactcctattgagaatattcgcaaaggc
gatatcgttctctcatccgatggaaagctcgtatggtcagcgaaagtcgcgaaacaatgg
caaagcggcattaagtcaattgttaaaattacgctctcaacaggtacagaaattttctgc
actccagagcatcgctttctcacaccagaaggcgatcagtttgcctatgaattaaagcca
ttgggcaatatcaagaatgctcatgtcaatggctcaatcatttatgaaacttggcaaatt
tctcaaaacaataaatcacttaaacccaatgaagcctatctattaggtttattagttggt
gatggacacttaacctctagttctccgaatattgcttgctctagtgaagaaactgctatt
tgggttgctaatttgattgctgagacatggaaaggtgaaccgaagcattattttcatacc
cgttgttggtatgcctatgcaaagttcaacactcaaccgcagccaacaccattaactatt
ttcatggataaaatatatggtggtagaacttggaaagtcaattctaaagataagcactta
cctgttgacatagttgattatcaggaatgtgatcgcattgatgttttgcgaggtctatgg
gatagcgatggttcctatactcaaaatccttatttccgtagtatttctaagcaactaatc
aaacaagtaggacaattgctaagcagcctaaaaatctcctattcattacattcaacccat
gtaatgattacggacattgcccgtttttatcagctaattggagagccaagattacccaat
aaactgataggagagaaaaagaataactttgttcctattccatctttaagaatgaaggaa
gagttagaagaggcgatcgctacaacagatcgagaaagtcgtaaaaccgcaaagcgttct
ctgcaagcaggagtaatggttaaacctgtgcgatcgcaatatgcaaccaaaattacaggt
tggactgaagcctatcaaaaaatttataccgagacatatttacaggatgctcgtccagta
tttgtaatatcggtagaagattgcgggactgctgaatgttttgatattgaaatggtagat
caaagttctccctattttctagccaatggagtcgttacacataactgctatcaagagcag
atcatgaaaatggcgcaggaattagcaggctattccctcggtgctgcggacttgttgcgt
cgagcgatgggtaaaaagaaacctgaagaaatggaaaaacagcgttccattttccttgat
ggttgcgcgaagaatggaattagaaaagaaatttctaatgacctctttgatcagatggtt
ctatttgcggagtattgcctcagttacgatactttggtgcgaactgtggaatatggctta
atccccatcggtaaaatcgtggagcatcaaatcgaatgtcaggtttacagtgtcgatgag
catggctttgtctatacgcaaaccattgctcaatggcacgatcgcggtaatcaggaagta
tttgaatatgagttagaaaatggcgatcgcattaaagctactaaggatcataagttcatg
acgactgatggagagatgctggcgatcgatgagatttttgagcgtggcttagatttgctt
tgttacaatagcgatcaagattaa
DBGET
integrated database retrieval system
