Pseudomonas sp. StFLB209: PSCI_3422
Help
Entry
PSCI_3422 CDS
T03623
Name
(GenBank) ECF subfamily RNA polymerase sigma-24 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pses
Pseudomonas sp. StFLB209
Pathway
pses02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pses00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PSCI_3422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pses03021
]
PSCI_3422
Transcription machinery [BR:
pses03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSCI_3422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_28
HTH_23
GerE
KORA
HTH_11
HTH_10
Phage_antitermQ
HTH_40
Motif
Other DBs
NCBI-ProteinID:
BAP44124
UniProt:
A0A077LQB2
LinkDB
All DBs
Position
complement(3851513..3852034)
Genome browser
AA seq
173 aa
AA seq
DB search
MAASELPLKQAVHELYTEHHGWLFAWLRKKLGCPHNAADLSHDTFVRIMGSRESLGRLRE
PRAFLTTTARHLLIDRARRRKIEDAYLRELALTADVLEHCQQSPEQILLTLESLEHITFV
LDGLHDNARQVFLLYFLEGRRQAEIASQLGISERMVRKHLLNALVHCNHALDV
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atggccgccagcgaactccctctcaagcaagccgtgcatgagctctacaccgagcaccat
ggctggctgttcgcctggctgcgcaagaagcttggctgcccgcacaatgccgccgacctg
tcgcatgacacctttgtgcgcattatgggttcgcgcgaaagcctcgggcggttgcgtgag
ccgcgggcgtttctgaccaccacggcgcggcatctgctgatcgaccgcgcccggcggcgc
aagatcgaggacgcctacctgcgcgagctggcgttgactgccgatgtgctggagcactgc
cagcagtcgccggagcagattctgctgaccctggaatcgctggagcacatcaccttcgtg
ctcgacggtctgcatgacaacgcccgccaggtgttcctgctgtatttcctcgaaggccgg
cgtcaggccgagatagccagccagttgggcatcagcgagcgcatggtgcgcaagcatctg
ctcaatgcgctggtgcattgcaatcatgcgctggacgtctga
DBGET
integrated database retrieval system