Pengzhenrongella sicca: J4E96_10595
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Entry
J4E96_10595 CDS
T07613
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psic
Pengzhenrongella sicca
Pathway
psic03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J4E96_10595 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psic03400
]
J4E96_10595 (ligD)
Enzymes [BR:
psic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J4E96_10595 (ligD)
DNA repair and recombination proteins [BR:
psic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J4E96_10595 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QTE27867
UniProt:
A0A8A4ZBK3
LinkDB
All DBs
Position
2330212..2331147
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AA seq
311 aa
AA seq
DB search
MQPMLATRAANPAALPTGPGWAYEVKWDGVRLLADTTGGPLRLLSRTGRDVTVSYPELGG
LGEIQGAVLDGEVVAMVDGRPSFAALADRMHVQDPARARALAAQRPVSYMVFDVPALYGV
ELARRPFDERRATLERLDLPAPALLSPVYDDGADLWEVTREHGLEGVVAKRRASTYQPGR
RSHDWVKAAHRFTRAALVGGWRAESTGSGRLGAVLLGAPDATGALRYLGRAGSGLTGPIG
AALTELLVPRARDASPFDEPVPALDARGTHWCEPTLVVDVVYLTRTPTGRLRQPVVRGVR
DDSPPDPWDEP
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcccatgctcgctacccgagcggcgaatcccgccgcgcttccgaccggcccaggc
tgggcctatgaggtgaaatgggacggcgtccggctcctcgccgacaccacgggcgggccc
ctgcggctgctcagccggaccggccgggacgtcaccgtctcctatcccgagctcggcggg
ctcggggagatccagggcgccgtgctcgacggcgaggttgtcgcgatggtcgacggccgc
ccgtcgttcgccgcgctcgcggaccgcatgcacgtccaggatcccgcccgggcccgcgcc
ctggcggcccagcgccccgtgagctacatggtgttcgacgtgcccgcgctctacggcgtc
gagctcgcgcgccgcccgttcgacgagcgccgcgcgacgctcgaacgcctcgacctgccg
gcgcccgcgctgctctcacccgtgtacgacgacggcgcggacctgtgggaggtgacgcgc
gagcacgggctcgagggcgtcgtcgcgaagcggcgcgcgtcgacctaccagccgggccgg
cgctcccacgactgggtcaaggccgcgcaccggttcacgcgggcggccctcgtcggcggg
tggcgcgcggagagcacggggtcggggcggctcggtgcggtgctcctcggcgcgcccgac
gccaccggtgcgctgcgctacctcggccgcgcgggcagcggcctcaccggcccgatcggc
gccgctctgaccgagctgctcgtcccgcgtgcgcgcgacgcgagcccgttcgacgagccc
gtgcccgccctggacgcgcgcggcacgcactggtgcgagcccacgctcgtcgtcgacgtc
gtctacctcacccggacgccgacgggccgcctgcgccagcccgtggtgcgcggcgtgcgg
gacgacagcccccccgacccgtgggacgagccgtga
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