KEGG   Pseudomonas silesiensis: PMA3_17285Help
Entry
PMA3_17285        CDS       T05412                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psil  Pseudomonas silesiensis
Pathway
psil03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PMA3_17285 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psil03400]
    PMA3_17285 (ligD)
Enzymes [BR:psil01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PMA3_17285 (ligD)
DNA repair and recombination proteins [BR:psil03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PMA3_17285 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S HC2 mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ANJ56804
UniProt: A0A191YVL8
LinkDB All DBs
Position
complement(3903701..3906436)
Genome map
AA seq 911 aa AA seqDB search
MNKNLDDYNRMRDFSATSEPAAKPSSKKKAQDHALQFCIQKHDASRLHYDFRLELDGALK
SWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPQEDPA
KAYAKGKLKFELQGEKLGGLWNLVRTHMPGKQEQWFLIKHQDGAAKPESEYDVVVAEPDS
VLSDRTILPKKSKAAAKPKPVKKPAAAAPKAQATPLTGARKARLPEQLKPELATLVEKAP
GGEWSYEIKFDGYRIMARIDHGEVQLFTRNGHDWTHKLPKQAEALAALGLESAWLDGEMV
VADEQGVPDFQALQNAFDSGRSGAILYYLFDIPYLNGVDLREVPVEERRAALATVLNANE
DPLLRFSDAFGEEPEALLNSACQMRMEGLIGKRLGSPYVSRRSSDWIKLKCKHRQEFVVV
GFTDPKGSRNGFGALLLGLHDRDSGELRYAGKVGTGFNETTLKHIHEQLKPLQTKKPSVV
NPPSGFDAKGVHWLKPTLLAEVAFAEMTKEGSVRHAVFHGLRDDKPAEDITEERAKAVKT
STSKPAAAKTATAKAATAKAAAAKTGAAKTAAEKTASERTAAEKNAPGKTASGKKSTAEK
PATQKKTAEPAPSQIGLGKGKVRITHPDRVIDASSGTTKVQLAEYYASVAEWILPELKDR
PVALVRAPDGIAGELFFQKNAERLAIPGITTLDKALTGQPVMIINNAEALIGAVQMSTVE
LHTWNATSDNLDKPDRFVLDLDPDPALPWKSMVEATQLTLSVLDELGLKAFLKTSGGKGI
HLVVPLTRKLGWDEVKDFSHAIVSHMAKLLPDRFSAVSGPKNRVGRIFIDYLRNGLGATT
ICAYAVRTRDGLPVSMPIFREEVGELKGGNQWNVHNVQERLAEVGDEPWAELKKTRQTIT
AEMRRRVGMKK
NT seq 2736 nt NT seq  +upstreamnt  +downstreamnt
atgaacaagaacctggacgattacaaccgcatgcgcgacttctcggccacttctgaaccg
gccgccaaaccgtcgagcaaaaaaaaagcgcaagaccatgcgctgcaattctgcatccag
aaacatgacgcttcgcgcctgcactacgactttcgcctggaactcgacggcgccctgaaa
agctgggcggtgcccaaggggccgtcactggatcccaaggtcaagcgcctggccgtccat
gtcgaagaccacccgctggactacgccacgttcgagggcagcatccccgaagggcattac
ggcgccggtgacgtgatcgtctgggaccgcggcgtatggattccccaggaggatccggcc
aaggcctacgccaagggcaagctcaagttcgagctgcagggcgagaagctcggcggtctg
tggaacctggtgcgcacgcacatgccgggcaagcaggaacaatggtttttgatcaagcac
caggacggcgcggcgaaacccgagagtgaatacgacgtggtcgtcgccgagcccgatagc
gtgctcagtgatcggactatcctgcctaaaaagtcaaaggccgcggccaagcccaagccg
gtgaaaaaaccggccgcggcggcgcccaaggcacaggcgacgcctttgaccggtgcccgc
aaagccaggctgccggagcagctcaagccggaactggccaccctggtcgagaaggccccg
ggcggcgagtggagctacgagatcaagttcgacggctatcgaatcatggcccgcatcgac
cacggcgaggtccaactgtttacgcgcaatggtcatgactggacccacaagctgccaaaa
caagccgaggccctggcagcgctgggtctcgagtcagcctggcttgatggcgaaatggtg
gtggccgacgaacagggcgtaccagacttccaggccttgcagaatgcgttcgattcgggc
cgcagcggcgccattctttactacctgttcgacatcccctacctcaacggcgtggacctg
cgcgaagtgcccgtcgaggaacgccgggcggcgctggcgacggtactcaacgccaatgaa
gacccgctgctgcggttctccgacgcgtttggcgaagagccggaagccttgctcaacagc
gcctgccaaatgcgcatggaagggctgatcggcaagcgtctggggtcgccctacgtgtcc
cggcgcagcagcgactggatcaagctcaagtgcaagcatcgccaggaattcgtggtggtt
ggcttcaccgatcccaaaggctcgcgcaatgggttcggtgccttgctgctggggctgcat
gaccgggacagcggcgaattgcgctacgcaggcaaggtcggcaccgggttcaacgagacc
acgctcaaacatatccacgagcaactcaaacccctgcagacgaagaaaccgtcggtggtc
aatccgccgagcggcttcgatgccaaaggcgtgcattggcttaagccgacactgctggcg
gaagtggcctttgccgaaatgaccaaggaaggctcggtacgccatgcggtgttccatggc
ctgcgcgatgacaaacctgccgaagacattaccgaggagcgtgcgaaagccgtgaagact
tcaacctcgaaacccgctgctgcgaaaactgccactgcaaaagccgccactgcaaaagct
gcggctgcaaaaactggcgctgcaaaaactgctgcggaaaaaactgcttctgaaagaact
gccgctgaaaaaaacgcccctgggaaaaccgcctctggaaaaaaaagcaccgctgaaaag
ccagccacccaaaagaaaaccgccgaacccgcaccttcacaaatcggcctgggcaagggc
aaggtgcgcatcacccatcctgatcgggtgatcgacgccagcagcggcaccaccaaagtg
caactggccgagtactacgccagcgtcgccgaatggatattgcccgaactcaaggaccgc
ccggtggcactggtgcgcgcccccgacggcatcgccggcgaactgtttttccagaagaac
gccgagcgcctggccattccggggatcaccaccctggacaaggccctgaccggtcaaccg
gtgatgatcatcaacaacgccgaagccctgatcggcgccgtgcagatgagcacggtggag
ctgcacacctggaacgccacctccgacaacctcgacaaacccgaccgcttcgtccttgac
ctcgacccggacccggcgctgccctggaaaagcatggtcgaggcgactcagctgaccctt
tcggtgctcgatgaactcgggctcaaggcatttctcaagaccagcggcggcaagggcatt
cacctggtggtgccgctgacccgcaagctcggctgggacgaggtaaaggacttcagccat
gccatcgtcagccacatggccaaactgctgccggatcgtttttccgcggtctccggcccg
aaaaaccgggtcgggcggatcttcatcgattacctgcgcaacgggctgggcgccactacc
atctgcgcctacgccgtgcggactcgcgacggcttgccggtgtcgatgccgatctttcgc
gaggaggtgggtgagctcaagggtggcaatcagtggaatgtgcacaacgtgcaggagcgg
ctcgcggaagtgggtgacgagccatgggcggagctgaagaaaacccggcagaccatcacc
gcagaaatgcggcggcgggtggggatgaagaagtag

DBGET integrated database retrieval system