Stutzerimonas stutzeri DSM 10701: PSJM300_08035
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Entry
PSJM300_08035 CDS
T02182
Name
(GenBank) DEAD-box ATP dependent DNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
psj
Stutzerimonas stutzeri DSM 10701
Pathway
psj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSJM300_08035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psj03019
]
PSJM300_08035
03009 Ribosome biogenesis [BR:
psj03009
]
PSJM300_08035
Messenger RNA biogenesis [BR:
psj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSJM300_08035
Ribosome biogenesis [BR:
psj03009
]
Prokaryotic type
rRNA helicases
PSJM300_08035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HrpB7
AAA_22
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AFN77677
LinkDB
All DBs
Position
1718073..1719734
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AA seq
553 aa
AA seq
DB search
MTQEIGGFAALGIHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAF
ALPILSKIDPARREPQALILAPTRELALQVATAFETYSKQMPGVGVVAIYGGAPMGPQLK
AIRQGAQIIVATPGRLVDHLSRNSALLSTIQFLVLDEADEMLKLGFMDDLEVIFEAMPES
RQSVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIPAVLRLL
EVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTNQKVAEVRLPNAQQVLDARIKKLTNGLAPLVADAEASHGELLDKLIADIGCSPRAL
AAALLRKATNGQALTLAEVEKEQPLVPTSGPRERSDRPERSGDRERRAPMPLAEGRARCR
TPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLERLLGKLKDTRV
GGKQLKLRRYRED
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggctttgccgcactcggtattcactccgccgtactggctgcc
atcagcgcagtcggctacgaagaaccatcccccattcaggcccaggcgatcccggtgatc
ctcggcggccacgacatgatcggccaggcgcagaccggtaccggcaagactgctgccttc
gcgctgccgatcctgtcgaagatcgacccggcccgtcgcgagccgcaggcgctgatcctt
gcgccgacccgcgagctggccctgcaggtcgccaccgcgttcgaaacctattccaagcag
atgcccggcgtcggcgtcgtcgccatctatggtggcgcaccgatgggcccgcagctcaag
gccatccgccagggcgcgcagatcatcgtcgcgacccccggccgtctggtcgaccacctg
agccgcaacagcgcactgctgtcgaccatccagttcctggtactcgacgaagccgacgaa
atgctcaagctgggcttcatggacgatctggaagtgatcttcgaagccatgccggaaagc
cgtcagagcgtgctgttctccgccacgctgccgcactccatccgcgccatcgccgagaag
cacctgcgcgagccgcagcacatcaagatcgccgccaagacccagaccgtggcgcgcatc
gagcaggcgcatctgatggtccatgccgaccagaagatcccggccgtgctgcgcctgctg
gaagtcgaggatttcgacgcgctgatcgccttcgtgcgtaccaagcaggccaccctggat
ctggccgccgcgctggaggccaaaggctacaaggccgccgcgttgaatggcgacatcgcc
cagaaccagcgtgagcgcgtcatcgaatcgctcaaggacggccgcctggacatcgtcgtg
gccaccgacgtcgctgcccgcggcctggacgtggcgcgcatcacccacgtattcaacgtg
gacatgccctatgatcccgagtcctacgtgcaccgcatcggtcgtaccggccgcgctggc
cgcgatggccgcgcgctgctgctggtcaccccgcgtgagcgccgcatgctgcaggtcatc
gagcgcgtgaccaaccagaaggtcgccgaagtgcgcctgcccaacgcccagcaggtgctg
gacgcgcgcatcaagaaactcaccaacggcctcgcgccgctggtggccgatgccgaagcc
agccatggcgagctgctcgacaagctgattgccgatatcggttgcagcccgcgtgccttg
gccgctgcgctgctgcgcaaggctaccaacggtcaggcgcttactctggccgaagtggaa
aaggaacagccgctggtgccaaccagcggtccgcgtgagcgttctgatcgtccagagcgc
agcggtgatcgcgagcgccgtgcgccgatgccgctggccgaaggccgcgcccgctgccgt
actccgctgggtgcgcgcgacggcattgccgcgcgtaacctgctcggtgccatcctcaac
gaaggcggcctggcccgcgaagccatcggtcgcatccaggtgcgcgacagcttcagcctc
gtcgaactgcccgaagaaggcctcgagcgcctgctgggcaagctcaaggacacccgtgtc
ggcggcaaacagttgaaactgcgtcgctatcgcgaggactga
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