KEGG   Pseudomonas stutzeri DSM 10701: PSJM300_09695Help
Entry
PSJM300_09695     CDS       T02182                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psj  Pseudomonas stutzeri DSM 10701
Pathway
psj03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PSJM300_09695 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psj03400]
    PSJM300_09695 (ligD)
Enzymes [BR:psj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PSJM300_09695 (ligD)
DNA repair and recombination proteins [BR:psj03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PSJM300_09695 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S Tudor_3 RIIa
Motif
Other DBs
NCBI-ProteinID: AFN78005
LinkDB All DBs
Position
2100853..2103375
Genome map
AA seq 840 aa AA seqDB search
MALDEYNRKRDFSATPEPGGTPAGRRGKQAALQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPKARRLAVHVEDHPLEYATFEGSIPEGHYGAGDVIVWDRGVWVPQGDPEEGY
RKGKLKFALEGEKLSGSWNLVRTRMDGNKEQWFLIKSNDETARPEGEYDIVREQPDSVLS
DRTLIPRQRGKAKAEAAAKPAKTPARRRSRKADEPATTLSGARPAPLPESLKPQLATLVE
SVPDGDWRYEIKFDGYRILARIESGEVRLFTRNGHDWTAKMPQQAKALAALGLESAWLDG
EVVVPNEEGTPDFQALQNAFEAGRSGRIVFYLFDLPYLNGMDLREVPLEERRTALRQVLE
AVPSDLLRFSADFTEQPDSILESACQMKLEGLIGKRAGSSYVSRRSSSWVKIKCKNRQEF
VIVGFTDPKGARSGFGALLLGLHDEQGELRYAGKVGTGFNQATLKSLHAKLEPLVVKRCP
LDKPPPAAEVRGAHWLKPELICEVAYAEMTRQGVVRHSVFHGLRADKPARAITHERPVST
PAKKSDAIRISNPERIIDQSIGATKMELARFYAEIAPWALPHLRHRPLALVRAPEGIEGE
LFFQKHTEKLSIPHITQLDRALYPEHAALMTIDSVEALIGAAQMGTIELHTWNALAPELD
HPDRFVLDLDPDPALPWKRMVEATQLTQTLLDEIGLQSFLKTSGGKGLHILVPLQPVHDW
SEVKGFSQAIARYLAKLLPQHFSAVSGPKNRIGRIFIDYLRNSQGASTVAAYSVRAREGL
PVSVPIHRDELAELKGANLWNIRNLMLRLEEQGDDDPWSGIDQTGQRITADMRERLGLKP
NT seq 2523 nt NT seq  +upstreamnt  +downstreamnt
atggccctggatgagtacaaccgcaagcgcgacttcagcgcgacccccgagcccggcggc
acacccgcaggcaggcgcggcaagcaggcggcgctgcagtactgcatccagaagcacgac
gccacgcgcttgcattacgacttccgcctggagctggacggcaccctgaaaagctgggcg
attcccaaggggccgtcgctcgaccccaaggccaggcgcctggcggtgcacgttgaggat
catccgctcgaatacgccaccttcgagggcagcattcccgaagggcactatggtgccggt
gatgtgatcgtctgggatcgcggcgtgtgggtaccgcagggcgaccctgaggagggctat
cgcaagggcaaactgaagtttgcgctcgagggggaaaagctctcaggaagctggaacctg
gtgcgcacgcggatggacggcaacaaggaacagtggttcctgatcaaatccaacgacgag
acggcgcggccggaaggcgagtacgacatcgtccgcgagcagccggacagcgtgctcagc
gatcgcaccctgatccctcgccagcgtggcaaggcgaaggccgaagccgcagccaagccg
gcgaagacacctgcgcggcgccgcagtcgcaaggcagacgaacctgccaccacgctttcc
ggcgctcgcccggcgccgctgccggaaagcctgaagccgcagctggcgacgctggtcgag
tcggtgcccgatggcgactggcgctatgagatcaaattcgacggctaccgcatcctggcg
cgaatcgagtcgggcgaggtgcggctgttcacccgcaacggccatgactggacggcgaag
atgccgcagcaggcaaaggcgctggcggcgctggggctggaatccgcctggctcgacggc
gaagtggtggtgcccaacgaggagggcacgccggatttccaggcgttgcagaatgccttc
gaagccggccgcagcggccgcatcgttttctacctgttcgacctgccttatctgaacggc
atggacctgcgcgaagtgccgctcgaagagcgtcggacggcgctgcgtcaggttctggaa
gccgtgccgagcgatttgctgcgcttctccgccgacttcaccgaacaaccggacagcatc
ctggagagcgcctgccagatgaagctcgaagggctgatcggcaagcgcgccggcagcagc
tacgtctccaggcgcagcagcagttgggtgaagatcaaatgcaagaaccggcaggagttc
gtcatcgtcggcttcaccgaccccaagggggcgaggagcgggttcggtgcattgctgctc
ggcctgcacgatgaacagggcgaactgcgttacgccggcaaggtcggcaccggtttcaac
caggccacgctgaaaagcctgcacgccaagctcgaaccgctggtggtgaagcgttgcccg
ctggacaagcctccgccggcggcagaagtgcgcggcgcgcactggctcaaacccgagctg
atctgtgaagtggcctatgcggagatgacccgccagggcgtggtgcgccattcggttttt
cacggcctgcgcgcggacaaaccggccagggcgatcactcacgaacgccccgtcagcacg
ccggcgaagaagagtgatgccatccgaatttccaatccggagcgaatcatcgaccagtcg
atcggcgccaccaagatggaactggcgcgcttctatgccgaaatcgcaccctgggcattg
ccccacctgcgccataggcccctggcgctggtgcgcgccccggaaggtatcgaaggcgag
ctgttcttccagaaacacacggagaaactgagcattccgcacatcacccagctggaccgc
gcgctctatccggaacacgcggcgctgatgaccatcgacagcgtcgaggcgctgatcggt
gcggcgcagatgggcaccatcgagttgcacacctggaatgcgttggcgccggagctcgat
cacccggaccgcttcgtcctggatctcgaccccgatccggccttgccgtggaagcgcatg
gtcgaggcgacccagttgacccagaccctgctggacgaaatcggcctgcaatccttcctg
aaaaccagcggcggcaagggtttgcatattctggtgccgctgcagcccgtccatgactgg
agcgaggtgaagggtttcagccaggccattgcgcgctacctggcgaaactcttgccgcag
cacttctcggcggtcagcgggccgaagaatcgtatcggccggatcttcatcgattacctg
cgcaacagccagggtgccagcaccgtggcggcctattcggtacgggcgcgcgaagggctc
ccggtgtcggtgcccatccaccgtgacgaactggcggaactgaagggcgccaatctctgg
aacatccgcaacctgatgctccggctggaagagcagggcgatgacgatccctggtcgggc
atcgaccagaccgggcaaaggatcaccgcggacatgcgcgaacgcctgggtttgaaaccc
taa

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