Stutzerimonas stutzeri DSM 10701: PSJM300_12560
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Entry
PSJM300_12560 CDS
T02182
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psj
Stutzerimonas stutzeri DSM 10701
Pathway
psj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSJM300_12560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psj03400
]
PSJM300_12560
Enzymes [BR:
psj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSJM300_12560
DNA repair and recombination proteins [BR:
psj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSJM300_12560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFN78574
LinkDB
All DBs
Position
complement(2766930..2770373)
Genome browser
AA seq
1147 aa
AA seq
DB search
MSVLRLPPMPAASGKQTWGNLPGAALSLAIAESASSAKRFTLLLTADSQSAERLKEELAF
FAPELPVLHFPDWETLPYDVFSPHQDIISQRIAALYQLPELTHGVLVVPITTALHRLAPK
RFLLGSSLVLDVGQKLDVEQMRSRLEAAGYRCVDTVYEHGEFAVRGALIDLYPMGSALPY
RIDLFDDEIETLRTFDPENQRSIEKVDSVRLLPAREFPVKKESVTGFRARFRERFDVDFR
RCPVYQDLSTGITPAGIEYYLPLFFDETSTLFDYLPEDTQVFSLPGIEQAAEQFWKDVRN
RFEERRVDPERPLLPPTDLFVPVEDCFSRLKLWPRVVASQEDVETGIGRERFPASPLPEL
AIEAKASEPLGALRRFLDEFPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWPAFLQS
KERLAISIAPLDDGLLLQQPQLALIAESPLFGQRIMQRRRREKTRDAGENVIKNLTELRE
GAPVVHIDHGVGRYQGLITLEIEGQSAEFLQLQYAEEAKLYVPVASLHLIARYTGSDDAL
APLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAARQGYAFQDPQLDYDTFSAGFPF
EETPDQQAAIDAVRADLLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVLVPTT
LLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEIQAAVNELAEGKVDILIGTHKLLQDDVK
FTNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATP
PARRLSVRTFVMEANKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIG
IGHGQMRERELEQVMGDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL
GDGQSGQIQAVGFTLYMEMLERAVKAIQKGEQPNLDQPMGGGPEINLRVPALIPEDYLPD
VHARLILYKRIANAADEDGLNELQVEMIDRFGLLPEPAKHLIRLTLLKLQAEKLGITKID
AGPQGGRIEFAADTPVDPMALIKLIQTQPKRYKFEGATVFKFQVPMERPEERFNTLEALL
ERLAPAE
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgccttccgcccatgcctgccgccagcggcaagcaaacctggggcaat
cttcccggagccgcgctgagcctggccatcgccgagtccgccagcagcgcaaagcgcttc
acccttctacttaccgccgacagccagagcgccgagcgcctcaaggaagaactcgccttc
ttcgcccccgagctgccggtgctgcatttccccgactgggaaacgctgccctacgatgtg
ttctcgccgcaccaggacatcatctcccagcgcatcgcggcgctctatcagctgcctgaa
ctgacccatggggtactggtagttccgatcaccactgcgctacaccgcctggcgcccaag
cgctttctgctgggctccagtctggtgctggacgtcggccagaagctcgatgtcgagcag
atgcgttcgcgcctggaagccgcgggttatcgctgcgtggacacggtgtacgaacatggc
gagttcgccgtgcgcggcgcgctgattgacctttatcccatgggcagcgccctgccctat
cgcatcgatctgttcgacgacgagatcgagacgctgcgcaccttcgacccggagaaccag
cgctccatcgagaaagtggattcggtgcgcctgctgccggcccgcgaattcccggtgaag
aaggaatcggtcaccggctttcgcgcacgcttccgtgagcgcttcgacgtggatttccgc
cgctgcccggtctatcaggacctctccaccggcatcaccccggcgggcatcgagtactac
ctgccgctgttcttcgacgagacctcgaccctgttcgactacctgcccgaggacacccag
gtgttctccctgccgggcatcgagcaggccgccgagcagttctggaaggatgtgcgcaac
cgctttgaggaacgccgcgtcgatcccgagcgcccgctactgccgcccaccgatttgttc
gtaccggtggaggactgcttctcccgtctcaagttgtggccgcgcgtggtcgccagccag
gaggatgtggaaaccggcatcggccgtgagcgcttccctgccagcccgctgccggagctg
gccatcgaagccaaggccagcgagccgctgggggcgctgcggcgctttctcgacgaattc
cccggtcgcgtgctgttcaccgccgaatcggccggtcgccgcgaagtactgctggaactg
ctggcccgcctgaagctgcgtccgcaggaagtcgatggctggccggcattcctgcagagc
aaggagcgcctggcgatcagcatcgcgccgctggacgacggcctgctgctgcaacagccg
cagcttgcgctgatcgccgaaagcccgctgttcggccagcgcatcatgcagcgccgccgg
cgcgagaagacccgcgatgccggcgagaacgtcatcaagaacctcaccgagctgcgcgaa
ggcgcgccggtggtgcatatcgaccacggcgtgggccgctatcagggcctgatcaccctg
gagatcgaaggccaatcggcggaattcctccagctgcagtacgccgaggaagccaagctc
tacgtgccagtggccagcctgcacctgatcgcccgctacaccggcagcgacgacgccctg
gcaccgctgcaccggctgggctcggaaacctggcagaaagccaagcgcaaggccgccgaa
caggtacgcgacgttgccgccgaactgctggacatctatgcccgccgcgccgcccggcaa
ggctatgccttccaggacccgcagctggactacgacaccttcagcgccggcttccccttc
gaggaaaccccggaccagcaggcggccatcgacgcggtgcgcgccgacctgctcgcgccc
aagcccatggatcgcctggtctgtggcgatgtcggcttcggcaagaccgaagtggccatg
cgcgcggcctttatcgccgttcacagcggcaagcaggtcgccgtactggtccccaccacg
ctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtaaag
gtcgaggtgatgagccgcttcaagtcggcgaaggaaatccaagcggcggtaaacgaactc
gccgaaggcaaggtggacattctcatcggcacccacaagctgctgcaggatgatgtgaag
ttcaccaacctggggctggtgatcatcgacgaggaacaccgtttcggcgtgcgccagaag
gagcaactcaaggcgctgcgcagcgaggtggacatcctcaccctgaccgccacaccgatt
ccacgcaccctgaacatggccgtggccggcatgcgcgacctgtcgatcattgccacaccg
ccggcacgccgcctctcggtgcgcaccttcgtcatggaggccaacaagccgaccatcaag
gaagcactgctgcgcgagctgctgcgcggcggccaggtctattacctgcacaacgacgtg
aagaccatcgagaagtgcgccgcagacctcgccgaactggtgcccgaggcgcgtatcggc
attggccacgggcagatgcgcgagcgggaactggaacaggtgatgggcgacttctaccac
aagcgcttcaacgtgctggtggcctcgaccatcatcgagaccggtatcgacgtgcccagc
gccaacaccatcatcatcgagcgcgccgacaagttcggtctggctcagctgcaccagcta
cggggtcgcgtcggccgtagccaccaccaggcctatgcctacctgctgacgccgccgcgc
aagcagatgacgccagatgcggaaaaacgtctggaagccatcgccaacgcgcaggacttg
ggggccggcttcgtgctggccacccacgatctggaaatccgcggcgccggcgagctgctc
ggcgacggccagagcgggcagatccaggcggtgggtttcaccctgtatatggaaatgctc
gaacgcgcggtcaaggccatccagaaaggcgaacagccgaacctggatcagcccatgggt
ggcgggccggaaatcaacctgcgcgttccagcgctgatccccgaagattatctaccggac
gtgcatgcccggttgatcctctacaagcgcatcgccaacgccgccgacgaggacggcctg
aacgagctgcaagtggagatgatcgatcgcttcggcctgctgccggaaccggccaagcac
ctgatccgcctgacgctgctcaagctgcaggccgagaagctcggcatcaccaagatcgac
gccggcccgcagggcgggcgcatcgagttcgccgccgatacgccggtggacccgatggcg
ctgatcaagctgatccagacccagcccaagcgctacaagttcgagggagcgacggtgttc
aaattccaggtgcccatggagcggcccgaggagcgcttcaacacgctggaagccttgctc
gaacgcctggcgcccgcggaatga
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