KEGG   Pseudomonas sp. TKP: U771_15340Help
Entry
U771_15340        CDS       T02969                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psk  Pseudomonas sp. TKP
Pathway
psk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    U771_15340 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psk03400]
    U771_15340 (ligD)
Enzymes [BR:psk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     U771_15340 (ligD)
DNA repair and recombination proteins [BR:psk03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     U771_15340 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AHC35593
LinkDB All DBs
Position
complement(3327354..3329858)
Genome map
AA seq 834 aa AA seqDB search
MAKPLSEYHRKRDFEITGEPAGDSKPNKRQASALAFVIQKHDARSLHYDFRLELDGVLKS
WAIPKGPSLDPSQKRLAVHVEDHPLSYGSFEGSIPAGQYGAGDVIVWDRGVWQPHGDPQK
AYAAGKLKFTLVGEKLAGDWTLVRTRLKGSGDKQQWLLIKEQDQQARPSSDYDIVQAQPR
SVLSEASVGTPTTAAKPSAKKASRKKTLALPDQFAPQLATLVDRAPEGNWLYEIKFDGYR
MLARIRDGEVRLFTRNGHDWTDRLPRQAKALQALKLKDSWLDGEVVSLNGDGLPDFQALQ
NAFDIGRSLDIVYYLFDAPFLEGRDQRQDPLEKRRAALKAALARSKSKLLRFSEAFAANQ
HDIFESARDLALEGVIGKRAGSPYVSSRNTDWIKLKCRLRQEFVIVGYTRPQGSRSGFGA
LLLAVNGDAGLVYAGRVGTGFDRAALQDIYARLTPLQRKTSPLDKPLTRAQARGVHWVEP
QLVGEVRFAEWTREGVVRQAAFVALRSDKPVEQIIHEQPRAAKSLQAPTARKSGAPSTVA
GVKITHPERIIDQHSGTQKLQLAQFYDSISRWILPFLHHRPVALLRALEGVGGEQFFQKH
TERLAIPHLQQLDPALDPGHARLMEIDSTAALVGAVQMGTVELHTWGATSDKIETPDLFV
LDLDPDPALPWKTMLEAAQLTLSVLDELGLQAFIKTSGGKGLHLVVPLARRDDWDTVKAF
AKAIAQFMTQQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPV
SRDELKGLRGAQQWTVANLHERLQGLKDNPWAGYANRQKISKRMWDKLGATPPE
NT seq 2505 nt NT seq  +upstreamnt  +downstreamnt
atggcaaaacccttgagcgaataccaccgaaagcgcgatttcgagatcactggcgaacct
gcgggtgactcgaaacccaacaagcgccaggcatcggcgttggcgttcgtgattcaaaag
cacgatgcgcgcagcctgcattacgactttcgcctggaactcgacggggtactcaagagc
tgggcaatacccaagggccccagcctggaccccagccagaaacgcctggccgtgcatgtc
gaggatcaccccttgagctacggcagtttcgagggcagcatcccggcgggccaatatggc
gccggcgatgtgatcgtatgggatcgcggcgtctggcaaccccatggcgatccgcaaaaa
gcctacgccgccggcaagctgaaattcaccctggtcggggagaaactcgccggcgactgg
accctggtgcgtacccgcctcaaaggcagcggcgataagcaacaatggctgctgatcaag
gaacaggatcagcaggcacgcccgagcagcgactacgatatcgtccaggcacagccccgg
agcgtgctcagtgaggcatcggtgggcacgccgacgaccgccgccaaaccctccgcgaaa
aaagcctcacgcaagaaaacgctcgccctgcccgatcaattcgcgcctcaactggccacc
ttggtcgaccgcgcaccggagggtaactggctctacgaaatcaagttcgacggctaccgc
atgttggcgcgtattcgtgacggcgaagtgcgcctgttcacgcgcaacggccatgattgg
actgaccgcttgccgcgccaggccaaggccctgcaagccctgaaactcaaggacagctgg
ctcgacggcgaagtggtcagcctcaatggcgatggcttgccggatttccaggccctgcaa
aacgccttcgatatcggacgcagcctggacattgtctattacctgttcgacgcgccgttt
ctagaaggccgcgatcaacggcaagacccgctggaaaaacgccgcgctgcgctcaaggcg
gccttggcccgtagcaagagcaaactgttacgtttctccgaggcgtttgccgccaaccaa
cacgatatcttcgaaagcgcccgcgacctggcattggaaggcgtgatcggcaagcgtgcg
ggtagcccctatgtatccagtcgcaacaccgactggatcaagctcaaatgccgtctgcgc
caggagttcgtgattgtcgggtacacccgcccccagggttcgcgcagcgggtttggcgcg
ctgttactggcggtcaacggcgatgccgggctggtctatgccgggcgtgtcggcaccggg
tttgatcgggccgctctgcaggacatctacgcccggcttacgccgctgcagcgcaagact
tcacccctggacaagccactgacccgcgcccaggcccgcggcgtgcattgggtggagccg
caattggtcggcgaggtgcgatttgccgagtggacccgtgaaggcgtggtacgccaggcc
gcgtttgtcgcgctgcgttctgataaaccggtggaacagatcattcatgagcagccacgc
gcggccaaatcgctgcaagcaccaacggcccggaagtccggcgcgcccagcaccgtcgcc
ggggtgaagattacccacccggagcggatcatcgatcagcacagcggcacgcaaaaactg
caactggcgcagttctacgacagcatcagccgttggatcctgcccttcctgcaccatcgc
cctgtggcattgctccgtgccctggaaggtgtggggggcgagcagttcttccagaagcac
acagagcgcctggcgatcccgcatctccagcaactggacccggcgttggaccccggtcat
gcccgcctgatggaaatcgacagcaccgccgccctggtgggcgcggtgcagatgggcacc
gtggagctgcacacctggggcgccacctcggacaagatcgagaccccagacctgtttgtg
ctcgatctcgacccggaccccgcactgccgtggaaaaccatgctggaagcggcgcaactg
accttatcggtgctggatgaattgggtctgcaggcctttatcaagaccagtggcggcaag
ggtttgcacctggttgtaccattggcacgccgcgacgattgggacaccgtaaaagccttc
gccaaggccatcgcccagttcatgacccagcaactgccggagcgctttaccgccacgtca
gggccgaaaaaccgcgtcggcaagattttcatcgattacctgcgtaatgcccgtggcgcc
agcacggtcgcggcctactcggttcgggcacgacccggcctgccggtatcggtgccggtc
agccgtgacgaattgaaagggttgcgcggtgcccagcagtggacggtggccaacctgcac
gaacgcttgcagggtttgaaggacaacccgtgggcgggttatgccaatcgacagaagatc
agcaagaggatgtgggacaagctgggcgcgactccacctgagtga

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