Pirellula staleyi: Psta_3991
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Entry
Psta_3991 CDS
T01147
Name
(GenBank) RNA polymerase alpha subunit domain protein
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
psl
Pirellula staleyi
Pathway
psl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Psta_3991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psl03021
]
Psta_3991
03400 DNA repair and recombination proteins [BR:
psl03400
]
Psta_3991
Enzymes [BR:
psl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Psta_3991
Transcription machinery [BR:
psl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Psta_3991
DNA repair and recombination proteins [BR:
psl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Psta_3991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
TPR_2
TPR_16
TPR_1
TPR_6
TPR_19
TPR_14
ANAPC3
TPR_12
TPR_17
TPR_8
MIT
TPR_7
TPR_11
TPR_9
TPR_10
Motif
Other DBs
NCBI-ProteinID:
ADB18645
UniProt:
D2R234
LinkDB
All DBs
Position
complement(5187960..5189282)
Genome browser
AA seq
440 aa
AA seq
DB search
MASVQVDIRDIVLSNSSFGPREITNLSQTIAEDYAQFGVLRDAVGELEVREDRTPAAAVR
LGVCYYLLGRYRSAAETLSSADGGAVAHYYLGKTRFAMGQYADAIKAYAAAKVAGYNSDD
TSLATAEAQRYEKQPQKAIETLDKLSGAVEQTAEYLYQRGATVAALGGSPVEVVALFERA
VEADGRHPGALFGLAVENDRHGNDELALQLYQRAAGTFPTNVGTLINLGILYEDRQAYDR
AQQCYNRVLEAFPEHPRARLYSKDAAASGNMLFDEEAQRRNDRLAQVLSIPVTDFELSVR
SRNCLQKMGVRTLGDLTRTSEQELLASKNFGETSLVEIRDMLHSKGLELGQFAAEKAVAE
PVLDLASMSPDEQALLERPISELNLSVRARKCMARLGLTLIGELVRKTGDDLLECKNFGV
TSLNEVREKLTTLGIKLRGD
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgtgcaggtcgatattcgcgacattgttttgtcgaactcttcgtttggtcct
cgtgaaatcaccaatctctcgcaaaccattgccgaagattacgcccaattcggcgtgctt
cgcgatgctgtgggcgaactggaagttcgcgaagatcgcaccccagccgctgccgtgcga
ctcggtgtttgctactacctcctcggccgttaccgctctgctgccgagactctctcgtcg
gctgatggtggcgctgtagctcactattacctcggtaaaacccgcttcgcgatgggccag
tacgccgacgcgatcaaggcctatgccgctgcgaaggttgccggctacaacagcgacgac
acgtcgctcgccacggccgaagcccagcgctacgaaaaacagcctcagaaggcaattgaa
acgctcgacaagctatcgggcgccgtcgagcagaccgctgaatacctgtatcagcgcggc
gcaaccgtggctgctcttggtggcagtccggtggaagttgtcgcgctgttcgaacgtgct
gtggaagccgatggtcgtcatcctggcgccctgttcggcctcgcggtcgagaacgatcgc
catggcaacgacgaactcgccctgcagctctatcaacgagccgctggcacattccccacg
aacgtcggcactctgatcaatctcggcatcctgtacgaagatcgtcaggcctacgaccgt
gctcagcagtgctacaaccgtgtgctcgaagccttccccgaacacccacgtgctcgcctc
tactcgaaagatgctgctgcctcgggcaacatgctcttcgacgaagaagcccagcgccgc
aacgatcgtttggctcaggttctcagcattcctgtgaccgacttcgagctttcggttcgc
agccgcaactgcctgcagaagatgggtgttcgcaccctcggcgatctcactcgcacttcg
gagcaagagctgctggcgagcaagaattttggcgagacctcgctcgtcgaaatccgcgac
atgctgcatagcaagggacttgagctcggccaattcgccgctgaaaaagcagtggctgaa
ccggtgctcgacctcgcttcgatgtcccccgacgaacaggctttgctcgaacgtccaatc
tcggaactcaacctctcggtccgtgctcgcaagtgcatggctcgccttggtttgaccctg
attggcgagctagtacgcaagactggcgacgatcttctcgagtgcaagaacttcggcgtt
accagtctcaatgaagtgcgcgaaaagctcacgaccctcggcatcaagctccgaggtgac
tga
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