KEGG   Pseudopedobacter saltans: Pedsa_1057Help
Entry
Pedsa_1057        CDS       T01430                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psn  Pseudopedobacter saltans
Pathway
psn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Pedsa_1057
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psn03400]
    Pedsa_1057
Enzymes [BR:psn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Pedsa_1057
DNA repair and recombination proteins [BR:psn03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Pedsa_1057
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ADY51628
UniProt: F0SBI2
LinkDB All DBs
Position
complement(1258647..1261115)
Genome map
AA seq 822 aa AA seqDB search
MSLEKYNKKRDFKQTSEPKSNKQRAKDNRLIFVIQRHHASHLHYDFRLELDGVLKSWAVP
KGPSLNPKDKRLAMMVEDHPFDYKDFEGEIPKGNYGAGTVYIFDKGEYQSLGKNRADDEA
TLRKGLKDGNLKFKLKGEKLKGEFALVKIKNSEDNSWLLIKHDDEFATNRKFEIEKLIPN
EIIKAGEDFKKETKSETSPQKNTKTIPQFSPMLAKLVKQPFNNEEWLFERKFDGYRILVY
INNSNSVKLESRNGKDYSEKYPAILQDFKKIKEQVVLDTEIVVLNKQGQDDFQLLQDYNP
SSKKDIRCFVFDILYLNGHEVVDLPLLKRKSLLEKLLNQYSFDRTYLTGYDVDKGEDCFQ
IAKENKWEGIIAKKIDSEYLPGRRSDSWLKIKTIQNQEAIIIGYTTPLKSRQYFGALVLA
INKNNKLEYIGNCGSGFDEKMLKKLYNLMSTYKTDKKPITEKVHREKDVQWIEPEIICEI
HFTEWTKGGNVRHPVFKGLREDKSPKDVEKEMPIDTEETLEGKKKVGGKTISLSNLNKLY
WPKERISKGQLIDYYEQFADLILPYTLDKPMSLNRFPNGIEKPGFYQKNVERDQLPNWIK
TVEIYSESAEKNINYLVCNNAASLIFLANLGCIELNPWLSSYKKPEFPEYIVIDIDPDGN
SFDKITQVALVVKDILDRIGVSCYVKTSGSTGLHIYIYTAQKYDYDFCKQFAEFIATKAH
EALPEFTSVNRRTDARKGKIYIDFLQNRRGQTIAAPYSVRPKPGATVSFPVSWDELDQIK
ISDFNIFSVPHLLKNRVDPWSDLRKHKQDLEKALKVFAKLRS
NT seq 2469 nt NT seq  +upstreamnt  +downstreamnt
atgagtctggagaagtacaataaaaaacgagatttcaagcaaaccagtgaaccaaaatcc
aataaacaacgagcaaaggataatagattaatatttgtaatacagagacatcatgcatct
catttacattatgactttaggttggagcttgatggcgtacttaaaagttgggcagttcca
aaagggccatcattgaatccaaaggacaagcgtttagcaatgatggttgaagatcatccg
tttgattacaaagacttcgaaggtgaaattcctaaaggaaattatggtgcaggaacagtt
tatatttttgataaaggtgaatatcaatctttaggaaaaaacagagcggatgatgaggca
acacttaggaaaggcttaaaagatggtaacttaaagtttaagctgaagggggaaaaatta
aaaggagagtttgcccttgtgaaaattaaaaatagcgaagataattcatggctactcatt
aaacacgatgatgaatttgcgaccaatagaaagttcgagatagaaaaattgatccctaat
gaaataataaaagcgggtgaggatttcaaaaaggaaacgaaaagtgaaaccagcccgcaa
aaaaataccaaaacaattcctcaattttcaccaatgttagccaaacttgtaaaacaacca
tttaataatgaggaatggctttttgaaagaaaattcgatggctatagaattttagtttat
ataaataattctaattcggtaaaactcgaatccagaaatggtaaagattatagcgaaaaa
taccctgcgatattacaggattttaaaaaaataaaggaacaagttgttttagataccgaa
atagtcgttctcaataaacagggacaggatgattttcagctacttcaggattacaatcct
agttcgaaaaaagatattagatgctttgttttcgatattttgtacttaaacgggcatgaa
gttgtggatttacctttgttaaagcgaaaaagtctcttagagaaattactaaatcaatat
agttttgatagaacttatctcactggatatgatgtagataaaggagaggattgtttccaa
atagcaaaagaaaataagtgggagggaattatagcaaaaaaaattgatagtgaatatctt
cctggaaggagaagtgattcctggttgaaaatcaagacgatacaaaatcaggaagctatc
attataggttatacaacacctttaaaaagcagacaatattttggcgcattggtacttgca
ataaataaaaacaataagttggaatatataggtaattgtggttctggtttcgacgaaaaa
atgcttaaaaaattatacaatttaatgtcgacctataaaacagataagaaacccataact
gaaaaagtacatagagaaaaggatgttcaatggatagaacccgaaataatctgcgaaatt
cattttacagaatggacaaaaggagggaatgtccgacatccagtgtttaaaggtttaaga
gaagataagtctccaaaagatgtggaaaaagagatgcccatagatacggaagaaaccttg
gaaggaaagaagaaagtaggcggaaaaacgataagtttaagtaacctgaacaaattatat
tggcccaaagaacgaatttcgaaaggtcaactaatagattattacgagcagtttgcagat
ttgatattgccttacactttagataaacctatgtcgttgaatcgttttccaaatgggatt
gaaaaaccggggttttatcagaaaaatgttgaaagagatcaattacctaattggataaaa
acagtagagatatactcggaaagtgcagagaagaatataaattatctagtatgtaataat
gcggcaagtttgatttttttagccaacttaggatgtatagaattaaacccctggcttagt
tcgtacaaaaaaccagaatttccggaatatattgttattgatatagatccggacggaaat
tccttcgataaaattacgcaggttgctcttgtggtgaaagacattctagatcgtataggt
gtaagctgttatgtgaaaacatcaggatcaaccggattacatatttacatttacaccgct
cagaaatatgattatgatttttgtaaacaatttgcagaatttatagctacaaaggcccat
gaggctcttcctgaattcactagtgtaaacagaagaaccgacgctcgaaaaggaaagatt
tacattgattttctgcaaaatagaagaggtcaaactattgctgcaccatattccgtacga
cccaaaccaggagctacagtttcatttcctgttagttgggatgaactggatcaaatcaaa
atttcggattttaatattttttcggttcctcatttactcaaaaacagggttgatccctgg
tccgatttgcgaaagcataaacaggatttagaaaaagcattaaaagttttcgccaagctg
agatcgtaa

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