Pseudarthrobacter sp. NIBRBAC000502771: NIBR502771_00275
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Entry
NIBR502771_00275 CDS
T06121
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psni
Pseudarthrobacter sp. NIBRBAC000502771
Pathway
psni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIBR502771_00275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psni03019
]
NIBR502771_00275
03400 DNA repair and recombination proteins [BR:
psni03400
]
NIBR502771_00275
Enzymes [BR:
psni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIBR502771_00275
Messenger RNA biogenesis [BR:
psni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIBR502771_00275
DNA repair and recombination proteins [BR:
psni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIBR502771_00275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
DUF3553
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
QDG60902
UniProt:
A0A4Y6QJW4
LinkDB
All DBs
Position
56730..58397
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AA seq
555 aa
AA seq
DB search
MSDEPALRALAASSFNLPDLRDGQLSGMAALAEGRDVLAVMPTGYGKSAIYQVAALHLHK
ATGRPAVVVSPLIALQEDQLDGLSQLLGPDAAVAINSSHSDAEIEDAWRAAGEGSAVFLF
LAPEQLAKQATVDRIKALDITLFVVDEAHCVSSWGHDFRPDYLALGRVRAQLGNPPVAAL
TATASPPVRDEIMERLGMNKPLVLVHGFDRPNISLDVVRHHEDKDKRKAVLVQVAGLARK
GHGLLYAATRKDTEKYAAKLVAEGLRAEAYHAGRSAGDRERIHELFLNDELDVVVATTAF
GMGIDKPNVRFVVHADIPESLDSYYQEIGRAGRDGAPASAVLHYRSEDLGLRKFFGTHSP
DPGSLLAVLKVLKAAHAPTPKSSLAELTGFKARRITSLVNQLEEIDAVSTGKRGVRLTSK
AKLPALVGDAVELAEARQRVDQSRLTMMRAYAETDGCRRQFLLGYFGEDLPDPCGNCDGC
AEAANQAAAKESDGGAPASAAGEPFPLQSTVVHKDWGPGLVMRHEDDVITVLFEQEGYKT
LSRAAVVEHQLLKPA
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgaacctgcccttcgggcccttgctgcttcctccttcaacctgccggacctt
cgggacgggcagctttccggcatggccgcgctcgcggaaggccgcgatgtcctggccgtc
atgcccaccggctacggcaaatcagcgatctaccaggtcgcagcactgcacctgcacaag
gcaacgggacgtcccgccgtcgtggtttcaccgctgattgccctgcaggaggaccagctg
gacggcctgtcccagctcctcggaccggatgccgccgtagccatcaattcctcacacagc
gatgccgaaatcgaggatgcctggcgcgctgccggggaaggctcggccgtgttcctgttc
ctcgccccggaacagctggccaagcaggcaaccgtggaccgtatcaaggcactggacatc
acgctgttcgtcgtggatgaggcacactgcgtctcctcctggggacacgacttccggccc
gactacctggcgctcggacgtgtccgcgcgcagctggggaacccgcccgtggctgcccta
acagctacggcttcccctccggtccgggacgagattatggagcggcttggtatgaacaag
cccttggtgctggtgcatgggttcgaccggcccaacatcagcctcgacgtggtccggcac
cacgaagacaaggacaagcgcaaagccgtgctggtgcaggtcgccggcctggcacgcaaa
gggcatgggctcctctacgccgccacccggaaggacacggagaaatacgccgccaaactg
gtcgcggaggggctgcgtgccgaggcgtaccatgcgggccggtccgccggggaccgggaa
cgcatccacgagctgttcctgaacgacgagctggacgtggtggtggccaccaccgccttc
ggcatgggaatcgacaagcccaacgtgcgcttcgtggtgcacgctgacatcccggaatcg
ctggactcctactaccaggagatcggacgggcaggcagggacggcgcacccgcctcagcc
gtcctgcactaccggtcagaggaccttggcctgcggaaattcttcggcacccactccccc
gatcccgggtctctccttgccgtcctgaaggtactcaaggccgcgcatgcacccacgccc
aagtcctccctcgcggagttgacggggttcaaggcccggcgcatcacgtcccttgtgaac
cagctggaggaaatcgatgccgtcagcaccgggaagcgcggggtgcggctcacgtccaaa
gccaagctgcccgcgttggtgggtgacgccgtcgagctggccgaagcccggcagcgggtt
gaccagtcgcggctgaccatgatgcgcgcctacgccgagacggacggctgccgccggcag
ttcctgctcggctactttggcgaggacctgccggacccctgcggcaattgtgacgggtgt
gctgaagccgccaaccaggcggcggcgaaggagtccgacggcggcgcgccggcatccgct
gccggcgagcctttcccgctgcagtccacggtggtccataaggactggggccccggcctg
gtgatgcggcacgaggacgatgtcatcacggtgctcttcgagcaggaagggtacaaaacg
ctgtccagggcagccgtcgtggagcaccagctgctgaaacccgcttag
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