Phytophthora sojae: PHYSODRAFT_309762
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Entry
PHYSODRAFT_309762 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
psoj
Phytophthora sojae
Pathway
psoj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHYSODRAFT_309762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psoj03019
]
PHYSODRAFT_309762
Enzymes [BR:
psoj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
PHYSODRAFT_309762
Messenger RNA biogenesis [BR:
psoj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PHYSODRAFT_309762
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PHYSODRAFT_309762
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
AFOR_N
Tri3
Motif
Other DBs
NCBI-GeneID:
20643188
NCBI-ProteinID:
XP_009516676
JGI:
Physo3_309762
UniProt:
G4YJ67
LinkDB
All DBs
Position
Unknown
AA seq
311 aa
AA seq
DB search
MKTPGMRELRDGAAAGTSQKLLVMTYNVLAQCYVRSSFFPYCKPSELRWKNRSKNLEAVF
ASSLPVSPDVICLQEVDNYSEFWADSMKKLGYDGLFIKKTSTKPDGVAVFWNAKKLKVKE
STHVNLDLPNGDESGEASQRGSVGAIVHFEHVDTPLDFVVATTHLFWDPMQEDVKLLQSR
RMLRTIEVFTRTLDASIPTIFSGDFNSLPDSKVYSFITEGNHFNSAYAQYGPDGEPPFTN
VNGDAKTDDGKLVPRFVGTLDYIFYRSPRIRPAALMEIMSFEDASKEVALPSTISPSDHL
PLLCEFHIQQQ
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgccgggcatgcgcgagctgcgcgatggcgccgcggctgggacctcgcagaag
ctgctggtcatgacgtacaacgtgctggcccagtgctatgtgcgttctagcttcttcccg
tattgcaagcccagcgagctgcggtggaagaacaggtccaagaacttggaagcagtcttc
gcctcgagcctcccagtctcgcccgacgtcatctgtctgcaggaagttgacaattacagc
gagttttgggctgattcgatgaagaagctcggatacgacggcctcttcatcaagaaaacg
agcaccaagccggacggcgtagctgtgttttggaatgcgaagaagttgaaggtgaaggaa
tccacgcacgttaacctggacttgcctaacggagacgaatcaggtgaggcttcccagaga
ggcagcgtcggtgcaatcgtccacttcgagcacgtcgatacaccgttggatttcgtagtc
gcgacaacgcacttgttttgggatccgatgcaagaagacgtgaagctgctgcaatcgcgc
cgaatgctgcgcacgatcgaggtgtttacacgcacgctggatgcctccattccgaccatc
ttttcgggcgacttcaactcgctgccagacagtaaggtctacagcttcatcactgagggc
aaccacttcaacagcgcttacgcacagtacggtccagacggtgaaccccccttcacgaac
gtcaatggtgacgctaaaacggatgacggtaagctggtgccgcgcttcgtcggcacactg
gactacatcttctaccgttcccccaggatccggccggcggcgctcatggagatcatgtcg
ttcgaagacgccagcaaggaggtcgctctgcccagcaccatctctccgtcggaccacctc
cctctgctctgcgagttccacatccagcagcagtag
DBGET
integrated database retrieval system