KEGG   Papaver somniferum (opium poppy): 113298693Help
Entry
113298693         CDS       T05758                                 

Definition
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
psom  Papaver somniferum (opium poppy)
Pathway
psom03030  DNA replication
psom03410  Base excision repair
psom03420  Nucleotide excision repair
psom03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psom00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113298693
   03410 Base excision repair
    113298693
   03420 Nucleotide excision repair
    113298693
   03430 Mismatch repair
    113298693
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psom03032]
    113298693
   03400 DNA repair and recombination proteins [BR:psom03400]
    113298693
Enzymes [BR:psom01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     113298693
    6.5.1.6  DNA ligase (ATP or NAD+)
     113298693
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     113298693
DNA replication proteins [BR:psom03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    113298693
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     113298693
DNA repair and recombination proteins [BR:psom03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     113298693
   NER (nucleotide excision repair)
    Other NER factors
     113298693
   MMR (mismatch excision repair)
    Other MMR factors
     113298693
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase NESP55
Motif
Other DBs
NCBI-GeneID: 113298693
NCBI-ProteinID: XP_026403288
LinkDB All DBs
Position
7
AA seq 771 aa AA seqDB search
MLSLRSCSYFGRKSLISTSFLSRFLLSKKPSLISISPFSSKANRNPRIKYLEMSDPPPPK
NAFAMLMGNRPNAKKKPQSPSPSPSKKDPKTLTEDALKVEAVTEDGPLAKKPKTLEGVKE
ESKEVKKEDKSVNLGEKIALLKKKGLDFKPKSVAFWKDGESIPFMFLARAFDLISNESSR
IVITDILGNVFRTVIATTPGDLVSFVYLSACKIYPAHDGIELGIGDAAIIKSLSEAYGKS
ETQIKKELKKEGDLGLVAKASRSSQSTMFKPAPLTVAKVLDTFRILAKVSGKDSQERKRN
HIKALLVAASDCEPLYIIRLLQSKLRIGLAEQTVLVALAQAAAYSERPSDPPIEEAVKVI
KQVYSVHPKYDTIVSALLSDGVLKLPDTCTFVPGVPIGPMLAKPTKGVSEILDKFQNRDF
TCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVIQSVQRFKKPSVSSFVLDCEVV
AFDRKNSKILSFQKLSNRARKDVSIDDITVQVCIFAFDILYLNGEQLLQEQLNVRRKHLY
DSFVEVPGEFKFATEVTSNDLEAIQTFLDTAIVDSCEGLIVKTLSTEATYEPAKRSNNWL
KLKKDYMDNIGDSLDLVPIGAYHGRGKRTGGYGGFLLACYDDEKEEFQCICKIGTGFSEK
MLEERSSSLESQVIPQPKSYYRFTDATNPDVWFEPTEVWEVKAADLSISPVYLAAAGAVD
AVKGISLRFPRLLRVREDKKPEEATTSDQVADMYRAQKINHGNNQDEEDDN
NT seq 2316 nt NT seq  +upstreamnt  +downstreamnt
atgctgtcgctgcgttcatgttcttatttcggcagaaaatccctaatttcaacatcattc
ctgtcccgatttctcttatccaaaaaaccctcgttgatctcaatctcccctttctcttca
aaagctaatcgtaaccctagaatcaaatatctcgaaatgtctgatccaccaccaccaaaa
aatgctttcgctatgctcatgggtaatcgacctaatgcaaagaaaaaaccccaatctcct
tctccttctccttccaagaaggaccctaaaaccctaacagaagatgcccttaaagttgaa
gctgtaaccgaagatggtcctctggctaagaaacctaaaaccctagaaggggtaaaagaa
gagtcaaaggaggtcaagaaggaagacaaatcagttaatttgggtgaaaagattgctttg
ttgaaaaagaaaggattagattttaagccaaaatcggttgcgttttggaaagacggggaa
tcgattccgtttatgtttcttgctagggcatttgatttgatatctaacgagtcatcaaga
attgtgattacagatattcttggtaatgtttttagaactgtaattgctactacacctgga
gatttggtttcttttgtttatctatctgcatgtaaaatttatcctgcacatgatgggatt
gagcttggcattggagatgctgctattattaagtcacttagtgaagcttatggaaagagt
gagactcaaattaagaaagagctcaagaaagagggagacttgggtttggtagcaaaagca
agccgttcttctcaatctacaatgttcaagcctgctccattaactgttgcgaaggttttg
gatacatttcgtattcttgccaaggtttcggggaaggatagtcaggagagaaaaaggaac
catatcaaagcacttcttgttgcagctagtgattgtgaacctctgtatataattcgtctt
ctgcagtcaaagttgaggattggtttggcagagcagactgtcttagtagctttggctcaa
gctgctgcatattctgaaagaccgtcagatcctcctattgaagaagctgtaaaggttata
aagcaagtctattccgtgcaccctaaatatgataccattgtcagtgctcttctcagtgat
ggtgtgttgaagctccccgatacatgtacttttgtaccaggtgttcctattggtcctatg
ttagccaaacccacaaagggggtgtccgagattctcgacaaattccagaacagggatttc
acctgtgagtacaagtatgacggggaacgtgctcagatacactacctcgaagatggttca
gttgagatatatagtcgaaatgctgaaagaaatactggaaagtttcctgatgttattcaa
tcagtgcaaaggttcaagaagccttcagtaagctcgtttgtcctggattgtgaagttgtg
gcatttgaccgcaaaaacagtaaaattttgtctttccagaaactgagtaaccgggctcgt
aaagatgtttccatcgatgacataacagttcaagtttgcatctttgcttttgatatattg
tatctcaatggtgaacaacttctccaagagcaattaaatgtccgtagaaagcatctttac
gactcatttgtggaagtaccaggagaatttaagtttgcgacagaagtaacatcaaatgat
cttgaagcaatacagacttttcttgatactgcaattgtggacagttgtgaaggtttgatt
gtcaaaacattaagtacagaagctacttatgagcctgcgaagaggtccaacaactggttg
aaactgaagaaggattatatggacaacatcggagactccctagatttagttcctataggg
gcataccatggcagaggaaaacgtactggtggttatggaggctttcttcttgcttgttac
gatgatgagaaagaggaattccaatgcatatgcaagataggcaccggattttctgaaaaa
atgctcgaagagcgttcttccagtcttgaaagtcaagtgattcctcaaccaaagtcatac
taccgctttacagatgcaactaatccagatgtatggtttgaaccaactgaggtgtgggag
gtcaaagctgcagatttgagtattagtcctgtttatcttgctgcagctggtgctgtggat
gcagtcaagggcatttcactgcgatttccacgcctgcttcgtgtacgagaagacaagaag
ccagaggaagccacaacgtctgaccaggttgctgatatgtatcgtgctcaaaagattaac
catggaaacaaccaagatgaagaggatgataactga

DBGET integrated database retrieval system