Paraclostridium sordellii: RSJ16_04345
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Entry
RSJ16_04345 CDS
T05252
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psor
Paraclostridium sordellii
Pathway
psor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSJ16_04345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psor03019
]
RSJ16_04345
03016 Transfer RNA biogenesis [BR:
psor03016
]
RSJ16_04345
Enzymes [BR:
psor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RSJ16_04345
Messenger RNA biogenesis [BR:
psor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RSJ16_04345
Transfer RNA biogenesis [BR:
psor03016
]
Prokaryotic type
tRNA degradation factors
RSJ16_04345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
DUF4191
S1_2
DUF1773
GcvP2_C
Motif
Other DBs
NCBI-ProteinID:
AUN13490
LinkDB
All DBs
Position
829414..831564
Genome browser
AA seq
716 aa
AA seq
DB search
MFEHKVFKMDFAGRELSVEIGKIAELASGSAILQYGETMVMVNVSKSAQPRDGIDFFPLS
VDYEEKLYSVGKIPGGFLKREGKPSEKAILTSRLIDRPIRPLFPKGFRNDVQIVATVLSV
DQDCTPDIVAMIGSSIALSISDIPFNGPTGSVSVGLVDGAFVINPTAEQREKSSLHLVVS
GTKDAIMMVEAGAEEIPDELMLEAILFAHEEIKKVVEFVEMIVAEVGKEKIEVTLYKIDE
DVEKAVREFATDKMKEAVKTVEKLERMEKMDAVKEETFTHFEEIAEEFGQDIEETLHAII
KEEVRKLIVHENIRPDNRKPDEIRPIWCDNGFIPRAHGSGLFTRGQTQVMSIATLGALGD
VQILDGLDEEESKRYMHHYNFPAYSVGEARPSRGPGRREIGHGALAERALLPVIPSKEDF
PYAIRVVSEVLSSNGSTSQGSVCGSTLSLLDAGVPLKDMVAGIAMGLIKHDDKVAVLSDI
QGMEDHLGDMDFKVAGTENGITAIQMDIKIAGIDEEVLRTALKQAKVGRIHILNEMRKTI
SESKPELSKYAPKIVTMNINPDKIRDVIGPGGKIITKIIDETGVKIDIEQTGEVFISGID
AEMIAKAQELINNIVAEAEVGETYTGKVTRIMNFGAFVEILPGKEGLLHISHIAHERVNK
VEDVLNVGDEVTVKVTEIDEKGRVNLSRKALLPKPEKKEVKEVKETKEEQSNKEEK
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaacataaagtttttaaaatggattttgcaggaagagagctttctgttgaaata
gggaaaattgccgaactagctagtggaagtgctatacttcagtatggtgaaactatggtt
atggtaaacgtatcaaagtcagctcaaccaagagacggaatagatttcttccctttaagt
gttgactatgaagaaaagttatattcagtagggaaaatacctggaggattcttaaaaaga
gaaggaaaaccttcagaaaaagcaatacttacatctagacttatagatagacctataaga
ccgttatttcctaagggatttagaaatgatgtacaaatagttgcaactgttttatcggta
gatcaagattgtactcctgatatagtagctatgatagggtcatcaatagctttatcaata
tctgatataccatttaacggaccaactggttctgtatcagtaggattagtagatggggca
tttgttataaatccaacagcagaacaaagagagaaaagttcacttcaccttgtagtttca
ggtacgaaagatgctataatgatggttgaagcaggggctgaagagattccagatgaatta
atgctagaagctatattatttgcacatgaagagattaaaaaagttgttgaatttgtagaa
atgatagtcgctgaagtaggtaaagaaaaaatagaagttactctttataaaatagatgaa
gatgtagaaaaagctgttcgtgagtttgctacagataaaatgaaagaagcagtaaaaact
gtagagaagcttgagagaatggaaaaaatggatgcagtaaaggaagaaacttttactcat
tttgaagaaatagcagaagagttcggacaagatatagaagaaacattacatgcaattata
aaagaagaagtaagaaaacttatagtacatgaaaatataagacctgataatagaaagcca
gatgaaataagacctatatggtgtgataatggatttataccaagagctcatggttctgga
ttatttacaagaggtcaaacacaagttatgtctatagcaacacttggagcattaggtgat
gttcaaatacttgatggacttgatgaagaagaaagtaagagatatatgcatcattacaac
ttcccagcatacagtgttggagaagctagaccatcaagaggtccaggtagaagagaaata
ggtcatggtgcgcttgcagaaagagcattacttcctgttataccttctaaagaagatttc
ccatatgcaataagagtagtttcagaagttttaagttctaatggatctacttctcaagga
agtgtatgtggatctacattatcacttttagatgctggtgttcctcttaaagatatggtt
gcaggtatagctatgggacttataaagcatgatgataaagttgctgtactttcagatatc
caaggaatggaagaccatttaggggatatggactttaaagtagcaggaactgaaaatggt
ataactgctatacaaatggatataaaaatagctggaatagatgaagaagttttaagaact
gctttaaaacaagctaaggttggtagaatacacatattaaatgaaatgagaaagactata
tctgagtctaagccagaactttctaagtatgcacctaagattgttactatgaacataaat
ccagataaaataagagatgtaataggacctggtggaaaaataatcactaagattatagat
gaaactggtgttaaaatagatattgaacaaacaggagaagtattcataagcggaatagat
gctgaaatgatagcaaaagctcaagaacttataaataatatagttgcagaagctgaagta
ggagaaacttacacaggtaaagtaactagaataatgaactttggtgcttttgttgaaata
cttccaggaaaagaaggattacttcatatatctcatatagctcatgaaagagttaataaa
gttgaagacgttcttaatgtaggagatgaagtaacagtaaaagttactgaaatagatgaa
aaaggaagagtaaacttatctagaaaagcacttttaccaaaacctgagaaaaaagaagtt
aaagaagtaaaagaaactaaagaagagcaatcaaataaagaagaaaagtaa
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