Pseudomonas sp. Os17: POS17_1977
Help
Entry
POS17_1977 CDS
T04177
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psos
Pseudomonas sp. Os17
Pathway
psos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
POS17_1977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psos03400
]
POS17_1977
Enzymes [BR:
psos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
POS17_1977
DNA repair and recombination proteins [BR:
psos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
POS17_1977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAQ73671
UniProt:
A0A0D6BFE4
LinkDB
All DBs
Position
complement(2165969..2169418)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSADRLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
QFLLGSSLVLDVGQKLDVEQMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVRLLPAKEFPLQKEAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDIETGVGRERFPAHELPNL
AIEAKANQPLAALSGFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLVLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLSGKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLIRLTLLKLQAETLGIKKV
DGGPQGGRIEFAADTPVDPLALIKLIQSQPKRYKFEGATLFKFMVPMERPEERFNTLEAL
FERLTPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgtcctgcgtctaccgctactccccgccgccgccggtaaacagcattggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaagccgccagcgctgccaagcgcttt
accctcctgctgaccgccgacagccaaagcgctgaccggctggaacaggagctgagcttc
ttcgccccggacttgccggtgctgcatttccccgattgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctctaccggctgccggag
ctggagcacggcgtgctggtggtgccgatcaccaccgccctgcatcgcctggcgccaacc
cagttcctgctgggcagcagcctggtgctggatgtcggccagaagctcgatgtggaacag
atgcgcacgcgtctggaggccagcggctaccgctacgtcgacacggtctacgagcacggc
gaattcaccgtgcgcggcgcgctgatcgacctgttccccatgggcagcaagctgccgtac
cgcatcgatctgttcgacgacgaaatcgaaaccctgcgcaccttcgacccggagaaccag
cgctccatcgacaaggtcgactcggtgcgcctgctgccggccaaggaattccccctgcag
aaagaagcggtaacccgtttcaaggcacgctttcgcgaacgcttcgacgtggacttccgc
cgctgcccgatcttccaggacctgagcagcgggattaccccggccggtatcgagtactac
ctgccgctgttcttcgaagagacctcgaccctgttcgactacctgccccaggacacccag
gtgttctccctgccgggcatcgaacaggccgcggaaaacttctggaacgatgtacgcaac
cgttacgaagaacgccgcgtcgacccttcgcgcccgctcctgccgccggccgaactgttc
ctgccggtagaagactgcttcgcccgcctgaagaactggccacgggtggtggccagccag
caggacatcgaaaccggcgtcggtcgcgagcgctttccggcccacgaactgcccaacctg
gccatcgaagccaaggccaaccagccgctggcggcgctctcgggcttcctcgacgagttc
cccggccgggtgctgttcaccgccgaatccgccggccgccgggaagtgctgctggagttg
ctggaacgcctcaagctgcgccccaagaccgtcgacagctggccggacttcgtcgccagc
aaggaacgcctggcgatcaccatcgcgcccctggacgaaggcctggtgctggacgatcca
gccctggccctggtggccgagagcccactgttcggccagcgggtgatgcagcgccggcgt
cgggaaaaacgcgccgacgccaataacgatgcagtgatcaagaacctcaccgagctgcgt
gaaggcgcgccggtggtgcacatcgaccacggtgtcggccgctacctgggcctggcgacc
ctggagatcgacaaccaggccgccgagttcctgaccctggagtacgccgagggcgccaag
ctctacgtgcccgtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcgccgttgcaccgcctgggctcggaagcctggcagaaagccaagcgcaaggccgcc
gagcaagtccgcgatgtggccgccgagctgctggacatctatgcccgccgcgccgcccgc
gaaggctacgcgttcgccgatccgaaggccgactacgccaccttcagcgccggcttcccc
ttcgaggaaaccccggaccagcagagcaccatcgaagcggtgcgcgaggacatgctctcg
ggcaagccgatggaccgcctggtgtgcggcgacgtcggcttcggcaagaccgaagtggcc
atgcgcgccgcgttcattgcggtccacggcggcaagcaggtggcgatcctggtgcccacc
accctgctcgcccaacagcactacaacagcttccgcgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgcttcaagtcggccaaggaagtgaacgccgcggtggcggac
ctggccgaaggcaagatcgacatcgtcatcggcacccacaagctgttgcaggacgatgtg
aagatcaagaacctggggctggtgatcatcgacgaagaacaccgtttcggcgtgcgccag
aaagaacagctcaaggccctgcgcagcgaagtcgacatcctcaccctgaccgccacgccg
atcccgcggaccctgaacatggcagtctcgggcatgcgcgacctgtcgatcatcgccacc
ccgccggcccgccgcctgtcggtgcggaccttcgtcatggagcagaacaagagcacggtc
aaagaggccctgctgcgcgaactgctgcgtggcggccaggtgtactacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgagctggccgaactggtgcccgaagcccggatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccgggatcgacgtgccc
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcccaactgcaccag
ttgcgcggccgggtcggacgcagccaccaccaggcctacgcgtacctcttgacgccaccg
cgccagcagatcaccccggacgcggaaaagcgcctggaagccatcgccaatacccaggac
ctgggggccggctttgtcctggccaccaacgacttggagatccgcggcgccggcgaactg
ctgggcgacggccagagcgggcagatccaggcggtgggcttcaccctttatatggagatg
ctcgagcgcgcggtaaaagccatccgcaagggcgaacagccgaacctcgaccagcccctg
ggcggcgggccggaaatcaacctgcgcctgccggcgctgattcccgaggactacctgccg
gatgtgcacgcgcgcctgattctctacaagcgcatcgcctccgccaccgacgaagacggc
ctgaaggacctgcaggtggaaatgatcgaccgcttcggcctgctgcccgagccgaccaag
aacctgatccgcctgaccctgctgaagctccaggccgagaccctggggatcaagaaggtc
gatggcggcccgcaaggcgggcgtatcgaattcgccgcggacactccggtagaccccttg
gcgctgatcaagctgatccagagccaacccaaacgctacaaattcgaaggcgcaaccctg
ttcaagttcatggtgccgatggagcgcccggaagagcgctttaatacattggaggcactg
tttgaacgcctcaccccgaaaactgcttga
DBGET
integrated database retrieval system