KEGG   Pseudomonas sp. Os17: POS17_1977
Entry
POS17_1977        CDS       T04177                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
psos  Pseudomonas sp. Os17
Pathway
psos03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:psos00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    POS17_1977
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psos03400]
    POS17_1977
Enzymes [BR:psos01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     POS17_1977
DNA repair and recombination proteins [BR:psos03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      POS17_1977
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter MFD_D3 Helicase_C CarD_TRCF_RID ResIII SNF2-rel_dom UB2H ERCC3_RAD25_C AroM AAA_22
Other DBs
NCBI-ProteinID: BAQ73671
UniProt: A0A0D6BFE4
LinkDB
Position
complement(2165969..2169418)
AA seq 1149 aa
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSADRLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
QFLLGSSLVLDVGQKLDVEQMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVRLLPAKEFPLQKEAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDIETGVGRERFPAHELPNL
AIEAKANQPLAALSGFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLVLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLSGKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLIRLTLLKLQAETLGIKKV
DGGPQGGRIEFAADTPVDPLALIKLIQSQPKRYKFEGATLFKFMVPMERPEERFNTLEAL
FERLTPKTA
NT seq 3450 nt   +upstreamnt  +downstreamnt
gtgcccgtcctgcgtctaccgctactccccgccgccgccggtaaacagcattggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaagccgccagcgctgccaagcgcttt
accctcctgctgaccgccgacagccaaagcgctgaccggctggaacaggagctgagcttc
ttcgccccggacttgccggtgctgcatttccccgattgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctctaccggctgccggag
ctggagcacggcgtgctggtggtgccgatcaccaccgccctgcatcgcctggcgccaacc
cagttcctgctgggcagcagcctggtgctggatgtcggccagaagctcgatgtggaacag
atgcgcacgcgtctggaggccagcggctaccgctacgtcgacacggtctacgagcacggc
gaattcaccgtgcgcggcgcgctgatcgacctgttccccatgggcagcaagctgccgtac
cgcatcgatctgttcgacgacgaaatcgaaaccctgcgcaccttcgacccggagaaccag
cgctccatcgacaaggtcgactcggtgcgcctgctgccggccaaggaattccccctgcag
aaagaagcggtaacccgtttcaaggcacgctttcgcgaacgcttcgacgtggacttccgc
cgctgcccgatcttccaggacctgagcagcgggattaccccggccggtatcgagtactac
ctgccgctgttcttcgaagagacctcgaccctgttcgactacctgccccaggacacccag
gtgttctccctgccgggcatcgaacaggccgcggaaaacttctggaacgatgtacgcaac
cgttacgaagaacgccgcgtcgacccttcgcgcccgctcctgccgccggccgaactgttc
ctgccggtagaagactgcttcgcccgcctgaagaactggccacgggtggtggccagccag
caggacatcgaaaccggcgtcggtcgcgagcgctttccggcccacgaactgcccaacctg
gccatcgaagccaaggccaaccagccgctggcggcgctctcgggcttcctcgacgagttc
cccggccgggtgctgttcaccgccgaatccgccggccgccgggaagtgctgctggagttg
ctggaacgcctcaagctgcgccccaagaccgtcgacagctggccggacttcgtcgccagc
aaggaacgcctggcgatcaccatcgcgcccctggacgaaggcctggtgctggacgatcca
gccctggccctggtggccgagagcccactgttcggccagcgggtgatgcagcgccggcgt
cgggaaaaacgcgccgacgccaataacgatgcagtgatcaagaacctcaccgagctgcgt
gaaggcgcgccggtggtgcacatcgaccacggtgtcggccgctacctgggcctggcgacc
ctggagatcgacaaccaggccgccgagttcctgaccctggagtacgccgagggcgccaag
ctctacgtgcccgtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcgccgttgcaccgcctgggctcggaagcctggcagaaagccaagcgcaaggccgcc
gagcaagtccgcgatgtggccgccgagctgctggacatctatgcccgccgcgccgcccgc
gaaggctacgcgttcgccgatccgaaggccgactacgccaccttcagcgccggcttcccc
ttcgaggaaaccccggaccagcagagcaccatcgaagcggtgcgcgaggacatgctctcg
ggcaagccgatggaccgcctggtgtgcggcgacgtcggcttcggcaagaccgaagtggcc
atgcgcgccgcgttcattgcggtccacggcggcaagcaggtggcgatcctggtgcccacc
accctgctcgcccaacagcactacaacagcttccgcgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgcttcaagtcggccaaggaagtgaacgccgcggtggcggac
ctggccgaaggcaagatcgacatcgtcatcggcacccacaagctgttgcaggacgatgtg
aagatcaagaacctggggctggtgatcatcgacgaagaacaccgtttcggcgtgcgccag
aaagaacagctcaaggccctgcgcagcgaagtcgacatcctcaccctgaccgccacgccg
atcccgcggaccctgaacatggcagtctcgggcatgcgcgacctgtcgatcatcgccacc
ccgccggcccgccgcctgtcggtgcggaccttcgtcatggagcagaacaagagcacggtc
aaagaggccctgctgcgcgaactgctgcgtggcggccaggtgtactacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgagctggccgaactggtgcccgaagcccggatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccgggatcgacgtgccc
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcccaactgcaccag
ttgcgcggccgggtcggacgcagccaccaccaggcctacgcgtacctcttgacgccaccg
cgccagcagatcaccccggacgcggaaaagcgcctggaagccatcgccaatacccaggac
ctgggggccggctttgtcctggccaccaacgacttggagatccgcggcgccggcgaactg
ctgggcgacggccagagcgggcagatccaggcggtgggcttcaccctttatatggagatg
ctcgagcgcgcggtaaaagccatccgcaagggcgaacagccgaacctcgaccagcccctg
ggcggcgggccggaaatcaacctgcgcctgccggcgctgattcccgaggactacctgccg
gatgtgcacgcgcgcctgattctctacaagcgcatcgcctccgccaccgacgaagacggc
ctgaaggacctgcaggtggaaatgatcgaccgcttcggcctgctgcccgagccgaccaag
aacctgatccgcctgaccctgctgaagctccaggccgagaccctggggatcaagaaggtc
gatggcggcccgcaaggcgggcgtatcgaattcgccgcggacactccggtagaccccttg
gcgctgatcaagctgatccagagccaacccaaacgctacaaattcgaaggcgcaaccctg
ttcaagttcatggtgccgatggagcgcccggaagagcgctttaatacattggaggcactg
tttgaacgcctcaccccgaaaactgcttga

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