KEGG   Pseudomonas savastanoi pv. phaseolicola 1448A: PSPPH_1389Help
Entry
PSPPH_1389        CDS       T00266                                 

Definition
(GenBank) DNA ligase, ATP-dependent
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
psp  Pseudomonas savastanoi pv. phaseolicola 1448A
Pathway
psp03030  DNA replication
psp03410  Base excision repair
psp03420  Nucleotide excision repair
psp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PSPPH_1389
   03410 Base excision repair
    PSPPH_1389
   03420 Nucleotide excision repair
    PSPPH_1389
   03430 Mismatch repair
    PSPPH_1389
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psp03032]
    PSPPH_1389
   03400 DNA repair and recombination proteins [BR:psp03400]
    PSPPH_1389
Enzymes [BR:psp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PSPPH_1389
    6.5.1.6  DNA ligase (ATP or NAD+)
     PSPPH_1389
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PSPPH_1389
DNA replication proteins [BR:psp03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    PSPPH_1389
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     PSPPH_1389
DNA repair and recombination proteins [BR:psp03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PSPPH_1389
   NER (nucleotide excision repair)
    Other NER factors
     PSPPH_1389
   MMR (mismatch exicision repair)
    Other MMR factors
     PSPPH_1389
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AAZ36184
UniProt: Q48LS6
LinkDB All DBs
Position
complement(1611699..1613402)
Genome map
AA seq 567 aa AA seqDB search
MKAFAELYAQLDATTSSNAKLAAMRDYFEKAAAEDAAWAVYFLSGGRPRQLVPTRVLREQ
AMTLANLPEWLFEESYQAVGDLAETLSLLLPQADHSNDEGLATWMEDKLLPLRGLPPEEL
AERLPMFWSQLDRSSLMVCIKLITGSFRVGVSKLLVTRALAALADIDSKRVAQRLVGYTD
LSHRPSAERYLKLIAPESEDEHAQRGGQPYPFFLAHSLQQPADQFEELLGAAENWQVEWK
WDGIRAQLVKRDGRLWIWSRGEELVTDRFPELHSLAQCLPDGTVIDGEIVVWKAPDPSPD
GSAEFALNGDATTASPSVQPFALLQQRIGRKTLGKKILADVPVVVLAYDLLEWQGDDWRS
RPQHERRAQLETLIESVQSEVLMPSPVLTGKDWLDLAKQREASRSLGVEGMMLKARDSLY
GVGRTKDMGVWWKWKIDPFSVDAVLIYAQRGHGRRASLYSDYTFAVWDGPPDASERTLVP
FAKAYSGLTDEEMRKVDAIVRKTTVEKFGPVSSVTPTLVFELGFEGIALSKRHKSGIAVR
FPRMLRWRQDKPVAEADSLASLQDLLN
NT seq 1704 nt NT seq  +upstreamnt  +downstreamnt
atgaaagccttcgcggaactctacgcacaactggacgcaaccacatcgagcaacgccaaa
ctcgccgcgatgcgtgactatttcgagaaagcggctgcagaggatgctgcctgggctgtg
tacttcctgtccggtggtcgccccaggcaactggtgccgacccgcgtgttgcgcgagcag
gcaatgacactggcaaatctgccggagtggctgttcgaagaaagctatcaggcggtcggt
gatctggcggagaccttgtcattgttgctgccccaggccgatcacagcaatgacgagggc
ctggccacctggatggaagacaagctgctgccgttgcgcggcctgccgcccgaagagctg
gcagaacgcctgccgatgttctggtcgcaactggaccgcagcagcctgatggtctgtata
aaactgattaccggcagtttccgggttggcgtatcgaaactgctggtgacgcgcgcactg
gctgcgctggcggacatcgacagtaagcgcgtcgcccaaaggctggtgggctataccgac
ctgtcgcataggcccagcgcagagcgttacctgaaactgatcgcgcccgaatccgaagat
gagcacgcacaacgtggcggtcagccttatccgttttttcttgcccattccctgcaacag
cccgccgatcagttcgaggagttgctcggggcggccgagaactggcaggtggagtggaag
tgggacggtattcgcgcacaactggtcaaacgtgacggacgcttgtggatctggtcgcgt
ggcgaagagctggtcaccgaccgttttcccgagctgcacagcctggcgcagtgcctgcct
gacggcacggtgatagacggcgaaatcgtcgtctggaaagctcccgacccaagccccgat
ggcagcgctgaatttgcgttgaacggtgatgccaccacagcatcaccttcggttcagccc
ttcgccctgttgcaacagaggattggccgcaagacactcggcaagaagatcctcgccgac
gttcccgtggtagtgctggcctatgacctgcttgaatggcaaggcgatgactggcgcagc
cggccgcaacatgaacgtcgcgcacaactggaaaccttgatcgaaagcgtccagagcgag
gtgttgatgccctccccggtgctcaccggcaaggattggcttgatctggcgaagcaacgt
gaagcctctcgcagtctgggcgtcgagggcatgatgcttaaggctcgcgactcgctgtac
ggcgtcggtcgcaccaaggacatgggcgtgtggtggaaatggaaaatcgacccgttcagc
gtcgatgccgtgctgatctacgcgcaacgcggccacggccgacgtgccagtctgtacagc
gactacacctttgcggtgtgggacggcccgcccgacgccagtgagcgcacgctggtgcca
ttcgccaaagcctactcagggctgaccgacgaggaaatgcgtaaggtcgacgccatcgtt
cgtaaaaccaccgtggaaaaatttggcccggtaagcagcgtcacgccgacgctggtattc
gaactgggctttgaaggcattgccttgtcaaagcgccacaagagcggcattgcggtgcgc
ttcccgcgcatgttgcgctggcggcaggacaagccggtggccgaagccgacagcctggcg
tcattacaggacctgctgaactga

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