KEGG   Pseudomonas savastanoi pv. phaseolicola 1448A: PSPPH_3165Help
Entry
PSPPH_3165        CDS       T00266                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psp  Pseudomonas savastanoi pv. phaseolicola 1448A
Pathway
psp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PSPPH_3165
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psp03400]
    PSPPH_3165
Enzymes [BR:psp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PSPPH_3165
DNA repair and recombination proteins [BR:psp03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PSPPH_3165
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AAZ33613
UniProt: Q48H05
LinkDB All DBs
Position
complement(3670092..3672692)
Genome map
AA seq 866 aa AA seqDB search
MAKPASEYTRKRNFAITSEPAESTRKGKSSSKAKALGFVIQKHDARNLHYDFRLELDGTL
KSWAVPKGPSLDPKQKRLAVHVEDHPLDYADFEGSIPKGQYGGGDVIVWDRGVWQPHGDP
QKTYEEGKLKFTLVGEKLSGDWALVRTRLTGSGSKEQWLLIKEKDAIARPAAEYDITLEQ
PQSVISGAHVGAGRAAPAKPKASAANEKAKAGAAKPARKPAQKKSKTVFPETLSPQLATL
VDAPPAGDWLYEIKFDGYRILTRIQGDEVSLFTRNGHDWTERLPELVKALKGLKLQNSWF
DGEVVVLDEQGLPDFQGLQIAFDAGNSKNILYYLFDMPFLSAEDLREVPLEQRRDALKQV
LDAQRSRLLRYSDAFQAGHQDIVKSAAAMGLEGVIGKRAGSVYIGKRNADWIKLKCRLRQ
ELVIVGYTAPQGSRSAFGALLLAVNEGDEGLVYAGRVGTGFSEVTLEQLYQQLKPLQRKD
SPLAKKLTSAQARGVQWVEPQLVCEAEFAQWTREGIVRQAAFVGLRSDKPASEVVREDAH
PARVASQTRTQSTSAAPRSGKKTAAGKGKVDVAGTGISHPDRVIDSKTGTSKVELAQFYA
SIAEWILPYLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIKQLDRALDPGHAALMEID
SLQALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEE
LGLEAFLKTSGGKGMHIIVPLARQADWDTVKAFAKAIAEFVSRQLPERFTATMGPKNRVG
KIFIDYLRNSRGGSTVTAYSVRARPGLPVSVPIALDELAGLKSSAQWDITNLEQRLKKLK
ADPWAGYSNRRKITQKMWKQLGAKRP
NT seq 2601 nt NT seq  +upstreamnt  +downstreamnt
atggccaagcccgccagtgaatacacgcgcaagcgcaattttgccatcacctccgagcct
gccgaaagcacgcgcaaaggcaagtcttcgtccaaggccaaggcgctgggtttcgtgatt
cagaagcatgacgcacgcaacctgcactacgactttcgactggagctggatggaacgctc
aagagctgggcggtacccaaaggaccgagtctggacccgaagcaaaaacgtctggcagtg
catgttgaagaccatccgctggactatgccgattttgagggcagcatcccgaaagggcag
tatggcggcggtgatgtgattgtctgggaccgtggcgtctggcagccgcacggtgatccg
caaaaaacctatgaggaaggcaaactcaaatttaccctggtcggcgagaagctcagcggc
gactgggcgctggtgcgcacgcggctcacgggcagcggcagcaaggagcagtggctgctg
atcaaagaaaaggacgccattgcgcgacctgccgccgaatatgacatcactctggagcag
ccgcagagcgtgatcagcggcgcgcacgtaggggcagggcgtgcagcgccagcgaagcca
aaagccagcgccgcaaacgaaaaagccaaagccggtgcagcgaagcctgcgcgcaagccc
gcgcaaaagaagtcgaaaacggttttcccggaaaccctttcgccgcaactggccacgttg
gtagatgcaccgccagcgggtgactggctgtatgagatcaagttcgatggctatcgcatt
ctgacccgcattcagggcgacgaagtgagcctgttcacccgtaacggccacgactggacc
gaacggctgcccgagctggtcaaggcgctcaagggcctgaaattgcaaaacagttggttc
gacggcgaagtagtggttctcgacgagcaagggttgcccgactttcaggggttgcagatt
gcctttgacgcagggaacagcaaaaacatcctgtattacctgttcgatatgccgttcctg
agtgcggaggatctgcgtgaagtaccccttgaacagcgccgcgacgccttgaaacaagtg
ctcgacgcccagcgcagtcgcctgctgcgttattcggatgcgtttcaggccgggcatcag
gatatcgtgaaaagcgctgcggcaatgggcctggaaggggtcatcggcaagcgggccggc
agtgtttatatcggcaagcgcaatgccgactggatcaaactcaaatgccggttgcgtcag
gaactggtgatcgtcggctacaccgccccacaaggcagccgctccgcattcggggccttg
ttgctggcggtcaatgaaggcgatgaagggctggtctatgccgggcgggtgggtaccggc
ttcagtgaggtgacgcttgaacagctttatcaacaactcaaaccgctgcagcgcaaggat
tcgcccctggcgaaaaaactgacctcggctcaggcccgcggcgtgcagtgggtagagccg
cagctggtctgtgaggcggaattcgcccagtggacccgcgaaggcattgtgcgacaagcc
gcatttgttgggttgcgcagtgacaagcctgccagtgaggtggtgcgcgaagacgctcac
cccgccagggttgccagccagacccggacgcaatcgacatcggcagcgccgcgttcaggc
aagaaaaccgctgccggcaaaggcaaagtggacgtggcgggcacgggcatcagccatccg
gatcgggtgatcgacagcaagaccggcaccagcaaggtcgaacttgcgcagttctacgcg
tctattgccgaatggattctgccgtatctgaacaagcgtcctgtggcattgttgcgttgc
ccggaaggcatcgacggcgagcagttcttccaaaagcacgccgagcatcttgcgattcca
cacatcaaacagctggatcgtgctctggaccccgggcatgccgcgctgatggagatcgat
tcattgcaggcgctggtcggtgccgcgcaaatgggggccatcgagttgcacacctggggc
gctacgcgtgacaggatcgaaacgccggatcattttgtactggaccttgatcccgacccg
gcgctgccctggcgcagcatgatcgaagccacgcaaatggtgctcgccgtgctggaggaa
cttgggctggaagcttttctcaagaccagcggcggcaagggcatgcacatcatcgtgcca
ttggcgcggcaggctgactgggacacggttaaagccttcgccaaggctatcgccgaattc
gtcagccgtcagttgcccgaacgcttcaccgcgaccatggggccgaaaaaccgggtaggg
aaaattttcattgattacctgcgcaacagccgtggcggcagcaccgtgactgcgtattcg
gtgcgcgcccggccaggtttgccggtctcggtgccgattgctctggatgaactggcaggc
ctgaaatcctcggcgcagtgggacatcaccaaccttgagcagcgtttaaagaaactcaag
gccgacccgtgggcaggctacagcaaccgccgcaaaatcacgcaaaagatgtggaagcag
ttgggggcgaaacggccctga

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