Pseudoalteromonas spongiae: PSPO_a1420
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Entry
PSPO_a1420 CDS
T05098
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PSPO_a1420 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspo03400
]
PSPO_a1420 (recD)
Enzymes [BR:
pspo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PSPO_a1420 (recD)
DNA repair and recombination proteins [BR:
pspo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSPO_a1420 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
SH3_13
AAA_11
Helicase_RecD
UvrD-helicase
AAA_22
SLFN-g3_helicase
RecD_N
DEAD
AAA_16
nSTAND3
CbiA
PIF1
Herpes_Helicase
T2SSE
AAA_28
NTPase_1
ResIII
AAA
UvrD_C
PhoH
SRP54
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
ATC98504
UniProt:
A0A290T2H5
LinkDB
All DBs
Position
I:1336874..1338688
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AA seq
604 aa
AA seq
DB search
MRELLIEYDKIDQFDLNLASILVPDIDSKIFYLVLLLSRAVRSQHSCLPLESIDKDDPFN
LALTEYGKKQSPFTTDDDFCALLQVHHSVGEQQPLRLFAKHLYFARYDDYEREFVEAVKA
RNALSTTLDLTELGNLLSHYFKDSEALDWQKVACAVACLKRFCIISGGPGTGKTTTVTKL
LAILQSLYSKVPLKVQLVAPTGKAAARLSESIAGAKQHLNIDSQIAKHIPDTAQTLHRLL
GVIHLSNKFRHNRQNPLDVDLVILDEASMVDLAMLAKLFDALPSHARVILLGDKDQLSSV
DTGNVLSDLCRPLTLGVDHNYTPETAKALAQLLNMPMNAAKPTLYELNDNLAYLQVSHRF
KTDSGIGRLAKAVNSNDLNALNEVYHSNSADLMFSSLETDFKGFIDRAAERYSVYLAAIR
NGDSIRDIHLAFANYQVLCATRVGPYGTNELNMKIEKQLGQQQLIKRTGNFYIGMPIMIS
ENNYQLNLFNGDIGIIIEDENGRLMASFIDDQGAERVISTTRLPQFDTVYAMTIHKSQGS
EFKHVAMLLPVNSPVLNRQLVYTGITRAKESFELVSLAGGLERAMARTVSRYSGLYARFQ
RNER
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgaactacttattgaatatgacaaaatcgatcagtttgaccttaatctggcgagc
atattagtaccagatatcgattctaaaatattttacctagtactgttattaagccgtgcg
gtgcgctctcagcactcatgtttaccgcttgaaagcattgataaagacgacccgtttaat
cttgctctcactgaatatggtaaaaagcagtcgccatttacaactgatgatgacttttgt
gcacttttgcaggtacaccacagcgtaggggagcaacagccacttcgtttgtttgcaaaa
cacctgtattttgctcgctatgatgattatgagcgtgagtttgtagaggcggtaaaggca
agaaatgcactttctactaccctcgatttaactgagttgggtaatttgctgtcgcattat
tttaaagactcagaggcccttgactggcaaaaagtggcctgcgccgtagcctgcttaaaa
cgtttttgtattatttctggtggaccgggtacaggtaaaaccaccacagtaactaaattg
ttggcaattctacaatcgctctacagcaaggtaccactaaaagtgcaacttgttgcgcca
acaggcaaagccgcggcgagactgagtgaatcgattgcaggtgcaaagcaacacttgaat
attgattcgcaaattgcaaagcatattccagacacagcgcaaaccttgcaccgtttgttg
ggggtgatccatttatctaacaagtttcgccacaatcgacaaaacccgctcgacgtggac
ttagtgattttagatgaagcctcgatggttgatttagccatgttagctaaactatttgat
gcattaccaagtcatgcgcgagttattttattaggtgacaaagaccaattatcgtcggtt
gatacgggtaatgtactgtcagatttatgtcgcccgttaacgttaggtgtcgatcataat
tacacaccagagacggcaaaagcccttgcgcagctacttaatatgccaatgaatgcggca
aaaccaaccttgtatgagctcaacgataaccttgcttatttgcaagttagccaccgtttt
aaaaccgacagcggcatagggcgattagcaaaagcggttaatagcaatgatttgaatgcc
ctgaatgaggtatatcactcaaacagtgcagatttgatgtttagctcgcttgagactgat
tttaagggatttattgaccgtgcagccgagcgctacagtgtttatcttgcagcaatacgc
aatggcgacagcattcgcgacattcatttagcgttcgcaaactaccaagtcctgtgtgca
acgcgtgttgggccgtatggtaccaacgaactcaatatgaaaattgagaaacagcttggc
cagcagcagttaattaaacgcactggtaatttttatattggtatgccaattatgatcagc
gaaaacaattaccagcttaatttatttaacggtgatattggcattatcatcgaagacgaa
aacggtcgattgatggcgagctttattgacgatcaaggtgctgaacgcgtgatttcaaca
acccgtttaccgcaatttgatactgtttatgcaatgacaattcataaatcgcaaggctct
gaatttaaacatgttgctatgttactaccagttaattcaccggtactcaatcgacagttg
gtatacacaggcattacgcgtgcgaaagaatcgtttgaattggtatcgttagcgggaggc
ttagagcgcgccatggcacgcacagtatcgcgatactcaggtctgtatgcgcgttttcaa
cgtaatgaacgctag
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