KEGG   Punctularia strigosozonata: PUNSTDRAFT_79558Help
Entry
PUNSTDRAFT_79558  CDS       T03131                                 

Definition
(RefSeq) DNA ligase I
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
psq  Punctularia strigosozonata
Pathway
psq03030  DNA replication
psq03410  Base excision repair
psq03420  Nucleotide excision repair
psq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PUNSTDRAFT_79558
   03410 Base excision repair
    PUNSTDRAFT_79558
   03420 Nucleotide excision repair
    PUNSTDRAFT_79558
   03430 Mismatch repair
    PUNSTDRAFT_79558
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psq03032]
    PUNSTDRAFT_79558
   03400 DNA repair and recombination proteins [BR:psq03400]
    PUNSTDRAFT_79558
Enzymes [BR:psq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PUNSTDRAFT_79558
    6.5.1.6  DNA ligase (ATP or NAD+)
     PUNSTDRAFT_79558
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PUNSTDRAFT_79558
DNA replication proteins [BR:psq03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    PUNSTDRAFT_79558
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     PUNSTDRAFT_79558
DNA repair and recombination proteins [BR:psq03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PUNSTDRAFT_79558
   NER (nucleotide excision repair)
    Other NER factors
     PUNSTDRAFT_79558
   MMR (mismatch exicision repair)
    Other MMR factors
     PUNSTDRAFT_79558
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 18885886
NCBI-ProteinID: XP_007378686
JGI: 79558
LinkDB All DBs
Position
Unknown
AA seq 811 aa AA seqDB search
MGRQQTLGKFFDMPRGVKPAPPQQASLAELWTSQGRTGAKEKAVKGSDDNMEVDHPEKRG
ISSTAGARPAPEEGPTKRKKRRILESDEESESIPATSSSGRHKPTARRLSAEQTATRKSS
DKTKSPSRTVQGAEDIDGGSVEDEGEDAVDEDENVAEESALAALSRIEEVDIKGGWKTGD
AVPYAALAKAFALIEATTKRLEKTSILTSFLLLVIRRSAQGDTKSLLQTVYLCINRLSPD
YVGVELGIGESLLVKAISESTGRSLAVVKADLKKEGDLGLVAQHSKNSQKTLFKPKALTV
PYVFSNLREIALSTGHSSQQKKVSVITKLLAACQGSEAKYIIRSLEGKLRIGNAERTVLV
ALAHAVVLAEKERGSKKWSEEKLTARLEEGANIIKSVYSELPTYDAVIPALLEHGIDGLK
EHCKLTPGVPLKPMLAKPTKAIGEVLDRFENKRFTCEYKYDGERAQVHRLEDGSVRVYSR
NSEDMSKKYPDLVEQLPRCIKETTKSFVLDAEAVAIDKTTKKLMPFQELSRRKRKDVKVE
DIQVRVCLFGFDLLYLNGEPLLRKSLSERRGLLREHFHPVDGEFQFAKSSDSQSTEDIQS
FLEESVKDGCEGLMVKMLETEASFYEPSRRSVNWLKLKKDYLAGVGDSFDLVVVGAYYGK
GKRTNVYGAFLLACYDADSEEYQTICKIGTGFSEDALQQHYDTLKPLEQSKPRGDIKIGG
AKPDVWLEPKVVWEVLAADLSLSPIYTAAQGLVEDRGVSLRFPRFIRVRDDKDAEDATAP
EQIAEMYERQALAQGNSGKKKRSGDPDDGFW
NT seq 2436 nt NT seq  +upstreamnt  +downstreamnt
atgggtcgccagcaaactctagggaaattctttgacatgccaaggggagtcaaaccagca
cctccgcaacaagccagtttggcggagttgtggacaagtcaggggaggacaggcgcgaag
gaaaaggcagtcaagggctcggatgataatatggaggtcgaccatccggaaaagagaggc
atcagctcgactgcaggtgcccgccccgcccctgaagagggacctacgaaacgcaagaag
cgtcggattttggagtctgacgaggagtcagagagcatacctgcaacatcttcctccggg
cgacacaaaccaactgcacgaagattatccgccgagcaaacagcgacacgcaaatccagt
gacaaaaccaaatctccatctaggaccgtgcagggtgcagaagacatcgatggtggctct
gtagaggacgagggtgaagatgccgtggatgaggatgagaacgtagctgaagagagcgcc
ctcgctgccttatcccgcatcgaggaagtagatatcaaaggcgggtggaagacaggggat
gctgtaccatatgccgctctggccaaggcttttgctctcattgaagcaaccacgaaacgg
ctggagaagacatcaattctcacttcctttcttctcctggttatccggcgcagcgcgcaa
ggagataccaaaagtctcctgcaaacggtctacctttgcataaaccgattgagccctgat
tacgtcggcgtcgaactcggaatcggtgaaagtttgcttgtcaaagcaatcagcgagtcg
accggtcgcagccttgcggtcgttaaggcggacctgaagaaggaaggtgacctagggctg
gttgctcagcactccaagaacagccagaaaactctgttcaaacctaaagcacttaccgtt
ccttacgttttctcaaatctgcgtgaaatcgccctcagcactggtcactcgagccagcag
aaaaaagtgtctgtcatcacgaagttgctcgcagcttgtcaaggatccgaagcaaaatat
atcatacgaagcttggaaggaaaattacgcattggcaatgcggagcggacggtactggtt
gctctggctcacgctgtcgtgcttgcagagaaggagcgcgggagcaagaaatggagcgaa
gagaagttaactgctcgtttggaggaaggcgcgaacatcatcaaatccgtgtacagtgaa
ttacccacgtatgatgcggtcatacctgctcttcttgagcacggtattgatggtttgaaa
gaacattgcaagctcaccccaggtgtaccattgaagcccatgctcgccaagccaaccaag
gctatcggagaagtcctagatcgctttgagaataagcgcttcacttgtgaatacaaatac
gatggcgagcgtgcgcaggtacatcgcctggaagacggctcggttcgcgtgtacagcaga
aactcggaggacatgagcaagaagtatccagatttggtagaacagcttccccgctgtatc
aaggaaacgacaaaatcatttgttctggatgcagaggccgtggctatcgacaagacgacc
aagaagctcatgccgttccaggaactgagtcgccggaaacggaaggacgtcaaggttgaa
gacatccaagtacgggtttgcctgtttggattcgatcttctctatttgaatggcgaaccg
ctacttcgaaagtctttgtccgagcggcgcggtttactgcgagaacattttcatccagtt
gacggcgaatttcaattcgcgaaatcgtcggatagtcagtccacggaggatatccaatcc
tttctggaagaatcggtcaaagatggctgtgaaggcctcatggtcaagatgcttgaaacg
gaagccagtttctatgagcccagcagacgcagtgttaattggctaaagctcaagaaagat
tatcttgccggtgttggcgattcctttgatcttgttgttgtgggcgcatactatggcaaa
ggcaaacgaaccaatgtttatggtgcttttctccttgcatgctacgacgcggactccgaa
gaataccagacgatatgcaagatcggtacaggattctctgaggatgctctacagcaacat
tatgataccttgaaaccgctggagcaaagcaaaccgcgaggggacataaagatcggaggc
gccaaaccggatgtctggctggagcccaaggtggtgtgggaagtgctggctgcggacctc
agcttgagtcctatatacaccgccgctcaaggtttggtggaggaccgcggcgtgtcctta
cgatttcctaggttcattcgtgtgagagacgacaaggacgccgaggatgcaactgcgccg
gagcagatcgctgagatgtacgagcggcaagctcttgcacaaggaaactccggtaagaag
aaacggagtggtgatcctgatgatgggttttggtga

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