Pelodiscus sinensis (Chinese soft-shelled turtle): 102443377
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Entry
102443377 CDS
T02980
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss04510
Focal adhesion
pss04512
ECM-receptor interaction
pss04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102443377
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102443377
09142 Cell motility
04820 Cytoskeleton in muscle cells
102443377
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pss04147
]
102443377
00536 Glycosaminoglycan binding proteins [BR:
pss00536
]
102443377
Exosome [BR:
pss04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102443377
Glycosaminoglycan binding proteins [BR:
pss00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102443377
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102443377
NCBI-ProteinID:
XP_025033823
Ensembl:
ENSPSIG00000015899
LinkDB
All DBs
Position
Unknown
AA seq
1787 aa
AA seq
DB search
MGNGLCYFVPSSVSSQGMSSVLASFAVHRFPKKPQRKIDLTVVCKMLTEARINQSRWHKH
TRLHIMRSQENQVHNISYSPERSNYEFCPHGTKRRVERNPIMDHVAVEIAAPAANVFQRK
VLGVVQDLLGPRTYRGSRIYWPEGLAGAKGERGAVGYPGSAGQKGDKGPMGVPGFQGING
IPGHPGQPGPRGFPGLDGCNGSIGSPGISGVDGFPGTPGPPGRFGPKGSKGEPAYAQGGL
KGSKGENGLPGLDGISGPKGFPGPAGFMGPIGLPGVQGPMGAQGPPGPKGNKGLGFQGET
GEKGDVGLPGPAGPPPSTGVLEFMGFPKGKPGAQGEPGPKGFPGVGGFPGPPGFGGIGEK
GEKGVPGLPGGRGSMGFDGLDGIPGKKGQLGLAGFPGLDGVQGMKGELGEMGLPGPLISI
DQENGLFSVDVSGDPGTPGSPGPRGDEGTPGLPGLPGSPGRSAVFQGAPGPMGFPGIPGI
PGEPGDQGRATIGLPGTPGLDGLPGMPGPPGLPGPSRPVFVPEEILDGEPGEPGTPGQRG
PPGVLGLKGTKGDPGDCACDGGATRAGPKGAPGPLGPPGRSGELGVKGSSGDPGSVGAQG
PRGPQALSGQPGSPGLKGEKGDPSFASGRGLRGDPGAIGVRGPPGIPGNPGRDGLLGLRG
LPGPPGDGGLGFPGEKGLPGLPGSKGRRGESGLPGIGFPGPNGVSGPSGDPGIDGFPGQP
GLPGPPGDCCCGEEVGKGVLDTEGGVTMPCAVPEAFGAPGPPGIPGRPGLKGSPGIPGSP
GQPGLSGSKGQPGSPGAIGLVGTQGFSGPRGDQGPPGLPGLDGTDGFPGKMGAPGLPGAK
GTPGEVFGAERGALGEPGRPGFPGDKGLAGEPGFPGQKGVDGRPGLPGFKGEQGNPGLPG
IAGLRGPPGPGGLFGIKGEPGPRGAGGFSGSPGCQGLPGVKGPTGDSGPPGPAGMKGFPG
LEGFPGPPGDRGFPGPPGPLGRDGRPGFSGAKGEKGPLGLIGFPGLPGMSGIPGVNGLKG
IPGAAGKEGNIGFSGPPGQKGDRGDRGPPGFPILRPPDLALALKGDKGDPGIAGLRGFSG
ARGDKGVLGNRGQPGLPGSRGSPSTDRGQPGDAGFPGLRGPPGFPGQKGQPGITGLPGFP
GESGSEGIPGVPGLPGTAGFPGPRGDPGESRGIMGGLGDKGERGDRGFPGERGIDGPKGE
PGYPGSIGIDGPKGVPGDRGREGLPGRPGSAGFRGNTGLPGSPGQPGPVGFIGLPGMAGP
KGFPGFPGLNGLNGLPGTKGSPGTPGLSEVGLNGPAGLPGPKGEEGSPGIGLGAPGLPGQ
KGSSGDMGLPGTLGLPGLPGSPGLSLPSNIPGRRGDPGRPGVDGNPGPPGPPGPQGPSGP
ASNQGDSGVPGFPGDPGFPGLKGDMGFPGSTGNPGASGLKGVKAEPGFMGMPGKDGLPGD
PGIPGLKGETGRRGFPGQPGAPGLTPKPEEIIVPPGLPGLPGIDGVPGFAGDHGFQGPLG
KQGPKGLLGRSGQVGRPGLPGPVGVVGDPGLPGIPGPQGLEGASGKPGPFGLPGMPGRSV
GVGYTLVKHSQSEQIPPCPIGMNKLWEGYSLLYVEGQEKAHNQDLGFAGSCLPRFSTMPF
IYCNIYEVCYYASRNDKSYWLSTTAPIPMMPVSSLEIPQYISRCSVCEAPSQAIAVHSQD
ITIPQCPEGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCH
YFANKYSFWLTTVERTQQFVSAPSSETLKAGQLRTRVSRCQVCMKNL
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatggtctctgctattttgtgccttcctcagtctcttcccagggaatgtcttca
gtgcttgcttcttttgctgtgcatagatttcccaagaagcctcagaggaaaattgacctc
actgttgtttgtaagatgctcacagaggccaggattaatcaaagcaggtggcacaagcat
acaagattacacataatgcggagccaggaaaatcaagtccataatattagttacagtcct
gagagaagtaattatgaattctgtcctcatggtaccaaaaggagggtggaaagaaatcct
ataatggaccatgtggcggtcgagattgcagcaccggctgcaaatgttttccagagaaag
gtgctcggggtcgtccaggacctattgggaccaaggacctataggggctccaggatttac
tggccagaaggtttggcaggggcaaaaggtgagagaggtgcagtgggctatccaggatca
gctggacaaaaaggagacaagggtccaatgggagttcccggatttcaagggatcaatggg
attccgggccaccctggtcaaccagggcccagaggtttccctggccttgatggctgcaat
ggctctattggaagtcctggcatttcaggggtggatggatttcctggtacaccggggcca
ccgggtcgctttggtcccaaaggttccaaaggagaacctgcctatgcccaaggtggcctt
aaaggaagtaagggtgaaaatggtcttcctggattggatgggatttctggtccaaaaggt
ttccctggcccagcagggtttatgggtcctataggattgccaggtgttcaggggccaatg
ggtgcacaggggccaccaggaccgaaaggaaacaagggattaggtttccaaggagagaca
ggtgaaaagggagatgtcggtctacctggacctgcaggtcccccaccatccactggggta
ctcgagttcatgggatttccaaaagggaaaccaggagcacagggtgagccaggccctaaa
ggattccctggggttggaggattccctggccctccgggctttggaggtatcggagaaaaa
ggagaaaagggggtccctggcttaccaggtggcaggggatcaatgggattcgatggactt
gatgggattccagggaaaaagggtcagttgggtcttgctggttttcctgggctggatgga
gtgcaaggaatgaagggtgaattaggtgaaatgggtcttccaggccctcttatttctatt
gatcaagaaaatggacttttctcagtggatgtgtccggagatcctgggactccagggagt
ccaggccctcgaggagatgaagggactcctggtttgccaggcctccctggctccccaggt
cgctcagctgtttttcaaggggcaccaggtcccatgggatttccaggtattccaggtatt
cctggtgaaccaggagaccaagggagagcaacaattggattaccgggtactccagggcta
gatggtttaccgggtatgccaggacctccaggactccctggtccatcacggccagtgttt
gtacctgaagaaatcctcgatggagaacctggggaaccaggaacacctggacaacgggga
ccaccaggagttttgggactaaaggggaccaaaggggatccgggtgattgtgcttgtgat
ggaggagccacaagagctgggccaaaaggagcaccaggccctttgggtccaccaggacgt
tctggtgaacttggggttaagggttccagtggagatccaggcagcgtgggtgcacaaggg
ccacgggggcctcaagctttatctggtcaaccaggttctccaggccttaagggagaaaag
ggggatccatcttttgcaagtggcagaggtctccggggggatcctggtgcaataggagtc
agagggcctcctggaatcccaggaaatcctggcagagatggattgctaggtttacgaggc
ctgccaggtcctccgggtgatggcggactaggctttccaggtgaaaaaggcttgccagga
ttgcctggctccaagggccggcgcggagagagcggtcttcccggcattggtttcccaggt
cctaatggagtgagcggcccttcaggtgatccaggaatcgatggttttcccggacaacca
ggtcttccaggtcctccaggtgactgctgctgcggtgaggaggttggtaaaggagtctta
gacacagagggaggagtcaccatgccctgtgcagttccagaagcgtttggtgcccctggg
cctccaggcataccaggacgcccaggtctcaagggcagcccgggcattccaggcagccca
ggccaacctggattaagtgggtcaaaaggacaaccaggcagtcctggagccataggactg
gttggcacacaaggcttttctgggcctcgtggagatcagggaccaccagggctcccagga
ctcgatggaacagatggtttccctggaaagatgggagctcctggcttaccaggagcaaaa
ggaactcctggtgaagtgtttggtgctgaaagaggtgctctgggtgagcctggcagacct
ggatttccaggagataaagggctcgctggcgaacctggatttcctggacagaagggtgtt
gatggaaggcctggcttaccgggttttaaaggtgaacagggtaatccagggctcccaggt
attgctggcttgcgaggacctcctggtcctggaggtctgtttggaattaaaggagaacca
ggtcctaggggagcaggtggcttctcaggatcaccaggctgtcaaggacttccaggagtc
aaaggaccgactggcgattcaggtccacccggccctgctggtatgaaaggcttccctggt
ctagaaggttttccgggaccacctggtgacagaggtttcccagggccacctggaccattg
ggtagagatggacgtccaggtttctctggagcaaaaggtgaaaagggtcccctcgggttg
attggcttccctggcctgccaggcatgtccggaatccccggggtgaatgggctgaaagga
attcctggtgcagctggaaaagaaggaaatattgggttctctggaccacctggtcaaaaa
ggtgacaggggtgatcgtggtccccctgggttcccgattcttaggcctccagatctggca
ttggcattaaaaggagacaaaggcgatcctgggatagcgggactgagaggattctccgga
gctagaggtgataaaggggtccttgggaaccgtgggcaacctggacttcctggttcacga
gggtcaccatccacagatagaggacaaccgggtgatgcagggttcccaggcttgcgtgga
ccgccaggctttccaggacagaaaggacagcctggaatcacaggactacctggatttcca
ggagaaagtggttcagagggtatcccaggagtaccagggctcccagggactgctggtttc
cctggtccaaggggtgacccaggagagtcgcgtggaattatgggtggcttaggagataaa
ggagaaagaggggaccgtggattcccaggtgagaggggaatagatgggccaaagggtgaa
ccaggatacccaggaagcattggaatagatgggcctaaaggtgtcccaggggaccgtggc
cgagaaggactaccaggccgccctggaagtgctggctttagaggaaatacaggtctccca
ggttctccagggcagcctggaccagtaggattcatcggactgcctgggatggcagggcca
aaaggatttcctggatttcctggtttaaatggtctgaacggtttgccaggcacaaaaggg
tcacctggaacaccgggtctgagtgaagttggattgaatggccctgcagggcttcctggt
cctaagggtgaagaaggttccccaggcattggcctaggagcaccaggactccctgggcag
aaaggatcatcaggagacatgggtcttcctggtaccttgggtctgcctggcttaccaggg
tctcctggcctctctcttccttcaaatatccctgggagacgtggtgatcctggccgtcct
ggagtggatggtaatccaggacccccaggccctccaggtcctcaaggaccctctggccca
gcctccaatcaaggtgattctggtgttcccggtttccctggagatcctggttttccagga
ttaaagggtgacatgggattccctggttcaactggaaatcctggagcttcgggactcaaa
ggtgtgaaggctgagccgggctttatggggatgccaggtaaagacgggctgccaggggat
cccgggattcctgggctgaaaggcgaaactggccgtcggggtttccctggccaaccaggc
gctccaggcctaacaccaaaaccagaagaaatcatagttcctccagggctacctggtctg
ccaggaattgatggtgtccctggcttcgctggagatcatggttttcagggacctctgggg
aagcaaggtccaaaaggtctgctgggcagatcaggtcaggtgggacgtcctggtttacct
gggccagttggcgtagttggggatccaggactcccaggtattccagggccacaaggactg
gaaggtgcctctggaaagccgggcccgttcggtttgcctggaatgccgggtcggagtgta
ggcgttggatacactttggtgaaacacagccagtctgagcagatcccgccatgcccaatt
ggaatgaataagctctgggagggttacagcttgctgtatgtggaagggcaggaaaaggcg
cacaaccaggatctcggttttgctggctcctgcttgcctcgcttcagcaccatgccattt
atttactgcaacatctatgaggtgtgctactatgccagccgaaatgacaaatcctactgg
ctctccaccactgctcccatccccatgatgccagtgagcagtctggagatccctcagtat
atcagtcgctgctcagtgtgtgaagccccttcccaggctattgcagtacatagtcaggac
atcaccatcccccagtgtccggagggctggcgcagcctgtggattggatactctttctta
atgcacactgcagctggtgcagaaggcggaggtcagtcccttgtctcgcccggctcttgc
ctcgaggatttccgggctactcctttcattgaatgcaatggtgccagaggaacctgccat
tactttgcaaacaaatacagcttctggctgacgacagtcgaacgcacgcagcagtttgtc
agtgctccttcctcagaaactctgaaagcaggacagctccgaacacgagtcagccgttgc
caagtgtgcatgaagaacttgtag
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integrated database retrieval system
