KEGG   Pelodiscus sinensis (Chinese soft-shelled turtle): 102451631Help
Entry
102451631         CDS       T02980                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
pss  Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pss00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    102451631 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pss03400]
    102451631 (LIG4)
Enzymes [BR:pss01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102451631 (LIG4)
DNA repair and recombination proteins [BR:pss03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     102451631 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT BRCT_2 RNA_ligase mRNA_cap_enzyme Pox_ATPase-GT Ribosomal_S5_C
Motif
Other DBs
NCBI-GeneID: 102451631
NCBI-ProteinID: XP_006115625
Ensembl: ENSPSIG00000001504
UniProt: K7F0E0
LinkDB All DBs
Position
Unknown
AA seq 912 aa AA seqDB search
MSCPPTSQSSPRRSVASVVPFADLCSILERIQKCKSRPEKTKYFKEFLDSWRKFHDALHK
KERDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTP
TGSHGDAGDFAMIAYFVLKPRCPKQGKLTIEQVNELLNSVAGNNAAKRKDLVKKNLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTIFSLFHPDASELHNVTTDLEKVCRLLHDPAVSL
SDVSIMLFSAFKPMLAAIANVKQIEKQMNNQSFYIETKLDGERMQMHKDGDVYKYFSRNG
YDYTQQFGASPLEGSLTPFIHNVFKNNIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMV
DDSDLQTCFCVFDVLLVNDQKLGHEVLSKRYEILNELFTPMIGRIHIVHKTQASTRKEVV
DALNEAIDNREEGIMIKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGL
RGGMMSHFLCAVAETSPPGEKPSVFHSVCRVGSGYTMKELYDLGLKLAKHWKPFRKRDPP
CNILCGTEKPEVYIEPCNSVIVQIKAAEIVASDMYKTDCTLRFPRIEKIREDKEWHECMT
LDFLEQLRGKASGKLASKHLDMGDDEPQEKKRKTVPKVKKIIGIMDQFKAPDLSNVNKVS
NIFEDVEFCVMTGTQNHSKSELESKVAESGGNVVQNPGPDTYCVIAGIENVRVKNIILSN
KHDVVRAEWLLQCFETKMFVPWQPAFMIHMSPDTKQHFACEYDCYGDSYTADTDLTQIKE
VFSRINENDEKMPLDMIADLEERYLWNSSPLSMFRQNTIYLDLYAAVNDPSTKTHGTMLS
IRALELRFHGAKVVSQLKEGVSHVVMGEDRTRVKEIKALRRTFERKFKILSELWVTDSIK
EGKLQYENQYLI
NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt
atgtcttgcccacctacttcacaatcttcccctaggcgaagtgtagcatcagtagttccc
tttgcagatctatgctcaattttagaacgaatacagaaatgtaaatcccggccagagaaa
accaagtattttaaggaatttttagattcatggaggaaatttcatgatgctcttcacaaa
aaagagagagatgtcacagactctttttatccagcaatgcgtcttattctcccgcaattg
gaaagagagagaatggcttatggaattaaagaaaccatgcttgctaagctgtatattgaa
ctgctcaatttacccaaagaaggaaaagatgccctaaaacttttaaattatagaacacct
actggctcacatggagatgctggagactttgcaatgattgcctattttgtattgaaacca
aggtgcccaaaacaagggaaactgacaatagaacaggtgaatgaactcttgaattcagtt
gctggtaataatgctgccaaaagaaaggacctagtaaagaaaaatcttcttcagttaata
actcagagctcagcactcgaacaaaagtggctaatcaggatgattataaaggatctaaaa
cttggtgttagccagcaaaccatattttcccttttccatcctgatgcttccgagttacac
aatgtcacaactgacctagagaaagtttgcagactacttcatgaccctgctgtgtcactc
agtgatgtttccatcatgttgttttctgcctttaaacctatgcttgctgctattgctaat
gtcaagcaaatcgagaaacaaatgaataaccagagtttctacatagaaactaaactagat
ggtgaacgtatgcagatgcataaagatggtgatgtatacaagtatttctcccgtaatggg
tatgattatactcagcagtttggtgcttctccccttgaaggttcattaactccatttatt
cataatgtgtttaaaaataatatacaaaactgcattcttgatggtgaaatgatggcctac
aatcccaatacacaaacttttatgcagaagggaaacaaatttgacataaaaagaatggta
gatgattctgatctgcagacatgtttttgtgtgtttgatgtattattggttaatgatcag
aaattgggtcatgaagtactaagcaaaagatatgagattctaaatgaactcttcacacca
atgataggcagaattcacatagtgcataaaacacaagctagcactaggaaagaagtagtt
gatgctctaaatgaagcaatagataacagagaagaaggaatcatgataaaagatcctatg
tccatttacaagccagacaagcgtggagaaggctggttaaaaatcaaacctgaatatgtc
aatggactcatggatgaactagaccttttaattgttggtggttactggggcaaaggtttg
cgtggtggcatgatgtctcactttttgtgtgctgttgctgagacttcccctcctggtgaa
aaaccatctgtatttcattctgtttgtcgtgttggttctggttacactatgaaggagctg
tatgatcttggtttgaagttggccaaacactggaaaccttttcgtaaaagagatcctcca
tgtaacattttatgtgggactgagaagcctgaagtttacattgagccttgtaactcagtc
atagttcagattaaggcagcggagattgttgctagtgatatgtacaaaactgactgcacg
ctgcgattccctcgaattgagaaaataagagaggacaaagagtggcatgaatgtatgact
ttggatttcttagaacagctcaggggtaaagcttcagggaagctagcatcaaagcacctt
gatatgggagatgatgaaccacaagaaaagaaacggaaaactgtaccgaaggtaaagaaa
ataattggaatcatggatcagtttaaagcccctgatctttccaatgtaaacaaggtttct
aatatatttgaagacgttgaattttgtgttatgactggaactcaaaaccattccaaatct
gaactggaaagtaaagtagcagaaagcggtggcaatgtggtgcaaaatcctggaccagac
acttattgtgttattgcaggaattgagaatgtcagagtaaaaaatatcatattgtccaac
aagcatgatgttgtgagagcagagtggcttttacagtgttttgaaacaaaaatgtttgta
ccatggcagcctgccttcatgattcacatgtctccagatacaaaacaacattttgcatgt
gagtatgactgttatggtgacagctacacagcagatacagatctgacccaaataaaggaa
gtattctcaagaattaatgaaaatgatgagaagatgcctttggacatgattgctgactta
gaagaacgttatttgtggaacagctctcctctcagtatgttcaggcaaaataccatttat
ctggacctttatgctgctgttaatgacccgagtaccaagacccatggaacaatgctatca
attagagctttggagctccgtttccatggagcaaaagtagtctcgcagctaaaggagggt
gtgtcccatgtagttatgggagaagatcgtacccgtgtgaaagagataaaagcacttagg
agaacatttgagagaaaatttaaaatcctatctgagctgtgggtaacagattctataaag
gaggggaagttacagtatgaaaatcaatatctaatttaa

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