Pseudomonas syringae pv. tomato DC3000: PSPTO_3841
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Entry
PSPTO_3841 CDS
T00118
Name
(GenBank) ribonuclease, Rne/Rng family protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPTO_3841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pst03019
]
PSPTO_3841
03009 Ribosome biogenesis [BR:
pst03009
]
PSPTO_3841
Enzymes [BR:
pst01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSPTO_3841
Messenger RNA biogenesis [BR:
pst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSPTO_3841
Ribosome biogenesis [BR:
pst03009
]
Prokaryotic type
rRNA processing factors
PSPTO_3841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AAO57308
UniProt:
Q87YF9
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All DBs
Position
4347221..4350607
Genome browser
AA seq
1128 aa
AA seq
DB search
MCAERRFRQPGNRRYYMKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKG
RITRIEPSLEAAFVDFGSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEK
EERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGL
IVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDI
GEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPS
GGSIVIDPTEALVSIDINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDF
IDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRC
NGTGIIRDVESLSLAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTR
ARIIILPNDQLETPHFEVQRLRDDSPEAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQ
EAAVKTAPARANAPVPVEVAAPAPTPAPVAHEPSLFKGLVKSLVSLFATKEEPVVAPAVV
EKPAAEQRPARNEERRNGRQQSRGRNNRRDEERKPREERAPREERAERAPREERAPREER
APREERAVREPREAREESAPREERPARTSRERKPREAREDRPVRELREPLDAVATAAQAG
PAVNLAREERPERAPREERQPRAPREERQPRAEQAAVAVSEEEEVLLNDEQANDDNQDGN
DGSEGDRPRRRSRGQRRRSNRRERQRDANGNVIEGSEENGSEENGAEETVNDEDNSATDL
SAGLGFTAAAASGVISATAEADAHQQAERANSTTQSAPAAEPVQQAAVAHAPVVETPAVE
APVAETSAVETPAPQAPAAEQTAEVPAVEAPVADDAPVAQPAPEVEVQPAAVEAPAIAAQ
TELFEAPHAERVVPFTPTPAPAPQAPVEAAAHEQVPATESSELPTPVEAPAAEPAAFVKD
EPAPYIAPQAAVEEQASAPAEQEPVIVETPAVPVSSTGRAPNDPREVRRRKREEEARRQQ
ETTAASAQAESAQPSQATEEKTDVATTEQPAVQPHHEAEKETEPKPLV
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
gtgtgtgccgaacgccgtttccggcagcccggaaaccgacggtactacatgaaaagaatg
ctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagacggccagcgcctc
tacgacctggacatcgagtcaggtgcacgcgagcagaagaaggccaacatctataaaggc
cggatcactcgtatcgaacccagccttgaggctgcctttgtcgatttcggctctgagcgc
cacggctttctgcccctcaaggaaatctcccgcgagtacttcaagaaagccccagaaggc
cgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtcgagaaa
gaagaacgtggcaacaagggtgcagccctgaccaccttcatcagccttgccggccgttat
ctggttctgatgccgaacaaccctcgcgccggtggcatctcgcgccgtatcgaaggcgaa
gagcgcaacgaactgcgtgaagcgctgaacggcctgatcgctcctgccgacatgggcctg
atcgttcgtactgccggccttggccgtagcagcgaagaaatgcagtgggacctcgattac
ctgctgcaactgtggaccgctatcaaggaagcgtccctggatcgttcggcgcctttcctg
atctaccaggaaagcaacgtcatcatccgcgccatccgcgattacctgcgccaggacatc
ggtgaagtcctgatcgacagcgtcgaagcccaggaagaagccctgaccttcatccgccag
gtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtgccgctgttcaac
cgcttccagatcgaaagccagatcgaaaccgccttccagcgcgttgtcgaactgccttcc
ggtggttccatcgttatcgatccgaccgaagccctggtgtccatcgacatcaactcggcg
cgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaaccttgaagcggct
gaggaaatcgcccgccaattgcgtctgcgtgacatcggcggcctgatcgtcatcgacttc
atcgacatgacgccggccaagaaccagcgcgccgtggaagaaaaagtccgcgaaagcctc
gaagccgaccgcgcccgcgttcaggtcggtcgcatctcgcgcttcggtctgctggaaatg
tcccgtcagcgcctgcgcccatcgctgggcgaaagcagcggcatcgtctgcccgcgctgc
aacggcaccggcatcatccgtgacgtcgaatcgctgtcgctggccatcctgcgcctgatc
gaagaagaagccctgaaagaccgtaccgcagaagtacgtgctcaggtgccgatcccggtg
gctgcgttcctgctcaacgagaagcgcaactcgatcaccaagatcgaactgcgcacccgt
gcgcgcatcatcattctgccgaacgaccagctcgaaacgccgcacttcgaggttcagcgt
ctgcgtgacgacagcccggaagcgcacaacagccagaccagctacgagattgccgctgcc
gctgccgaagtggaagaaattgccccactggccgcagcaacccgcaccctggttcgccag
gaagccgccgtcaagacagccccggcacgtgccaacgcacctgttccggtggaagtcgct
gcgcctgctccaacgcctgcgcctgtcgctcacgagccaagcctgttcaagggtctggtg
aaatcgctggtcagcctgttcgcgaccaaggaagagcctgttgttgcaccggctgtggtt
gaaaaacctgctgccgaacagcgcccggcccgcaatgaagagcgtcgcaacggtcgtcaa
cagagccgcggccgcaacaatcgtcgcgacgaagagcgcaagcctcgtgaagagcgcgcg
ccccgcgaagaacgtgcagaacgcgcaccgcgcgaagagcgtgcgccccgtgaagaacgt
gcaccgcgtgaagaacgcgccgttcgcgagcctcgtgaagcccgcgaagagtcagccccg
cgcgaagagcgtccggcacgtacatcccgtgagcgcaagccgcgtgaagcccgtgaagat
cgtccggtccgcgaactgcgtgagcctctggacgcagtcgccaccgcagcccaggccggt
cctgccgtgaacctggctcgtgaggagcgccctgaacgcgcgccacgcgaagaacgccaa
ccgcgcgcaccgcgtgaagaacgtcaaccacgcgccgaacaggctgcggttgccgtgagc
gaagaagaggaggtgctgctcaacgacgaacaggccaacgacgacaatcaggatggcaac
gatggcagcgaaggtgatcgtcctcgccgccgttcccgcggtcagcgtcgtcgcagcaac
cgtcgcgagcgtcagcgtgatgccaacggcaacgtgatcgaaggttctgaagagaacggt
tcggaagaaaacggcgctgaagaaaccgttaacgacgaagataatagcgccaccgatctg
tcggcgggtctgggcttcaccgccgcggcagcaagcggtgtaatcagcgccacggccgaa
gccgatgcgcaccagcaggcagagcgcgcaaacagcaccacccaaagcgctccagccgca
gaacctgtgcaacaggctgctgttgcccatgctcctgttgtcgaaacacctgcggtcgaa
gcaccggtagctgaaacatcggcagttgaaacgccagcacctcaagcaccggcagcagag
cagacggccgaagtgcctgctgttgaagcgccggttgcagacgatgcgccagttgctcag
cctgctccggaagtggaagttcagcctgcagcggtcgaagccccggctattgccgcgcag
accgagctgttcgaagcacctcacgcagagcgcgtcgtgccgttcacgccaacgcctgca
cctgcgccacaagcgccggtcgaagcagcggctcatgagcaagtgccagccactgaatca
tccgaactgccaacgcctgtcgaggcacctgctgccgagcctgctgcgttcgtgaaagac
gagcctgctccttacatcgcgcctcaagccgctgtcgaggaacaagcatctgcaccagca
gagcaggaaccagtgatcgtcgaaacaccggctgtaccggtcagcagcaccggccgtgca
ccgaacgatccacgtgaagttcgtcgccgcaagcgcgaagaagaagcacgccgccagcag
gaaacaactgctgccagcgcgcaagcagaatcggcccagccttcccaggccaccgaggaa
aagactgacgtggcgacaactgagcaacctgcagttcagccgcaccatgaagccgagaaa
gaaaccgagcctaaacccctcgtttaa
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