Paenibacillus stellifer: PSTEL_01285
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Entry
PSTEL_01285 CDS
T03335
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pste
Paenibacillus stellifer
Pathway
pste03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pste00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSTEL_01285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pste03019
]
PSTEL_01285
03016 Transfer RNA biogenesis [BR:
pste03016
]
PSTEL_01285
Enzymes [BR:
pste01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PSTEL_01285
Messenger RNA biogenesis [BR:
pste03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSTEL_01285
Transfer RNA biogenesis [BR:
pste03016
]
Prokaryotic type
tRNA degradation factors
PSTEL_01285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
SelB-wing_2
Motif
Other DBs
NCBI-ProteinID:
AIQ61959
UniProt:
A0A089MZZ0
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All DBs
Position
231438..234164
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AA seq
908 aa
AA seq
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MLTQENLLDFMRETAYKPMTYEELIDHFAFADEEPLKAFNLLLGELEQDGRIVLTRTKRY
GVPERMDLLRGRLQAHAKGFAFLIPDDRDHPDVYIHANDIKSAMNGDIVLVRVTSRSHSG
GRMEGEVVRIVRRGVLQTVGVFQSLETYGFVLPDDKRINRDIFIPKESFNGAVDGEKVVV
RIVNYPEGRAAAEGEIIEILGHKDDPGVDILSVIRKHQLPEAFPEEVMAEANAAPDSITE
EEIAQQGRRDLRGLNIVTIDGEDAKDLDDAVNVGRLENGHYTLGVHIADVSYYVRENAPL
DKEAYDRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTMSCTMEFDENMKVVKHDIFT
SVIRTKERMTYTNVRKILMDEDSELLERYAPLIEDFKLMRELAMKLRDARMCRGAVDFDF
QESKIIVDENGKAVDIVKRERSIAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPDP
EKLQNFMAFAANFGYHVKGRGNSVHPRALQKLLEDIQGTKEQTVISTMMLRSMKQAKYDA
ESTGHFGLAAEYYSHFTSPIRRYPDLVIHRVIREVLEGGGALTEKRQEYLASRMPDIAQQ
SSERERVAVEAERDTEQLKKAEYMQDKVGEEFDAMISSVTSFGMFVELENTVEGLIRLSH
LTDDYYHFDEGHMALIGERTSKVFRIGDEVKIRVAKVNMDDHTIDFELVDMKPRAAGEHR
SGGFGGGGRGGHGSRDRRGGHGAAVAHGPGGGKGRTAGKGGAAAGGSRGKRGRGGRVLAA
SPAAGAAERSGGAGARSPRGEAGDAAGGTRGISFGFGSGKGGYGAPPGARGDVYTGVSGD
TKFRTREDLGGDYGGKSGGKGRRKKKTQSGVFIGESVTPGSGAIEAGSGNGNGERKKRKK
KKKEKANK
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgcttactcaagagaatctgctggatttcatgcgggaaaccgcttataaaccgatgacg
tatgaagagctgatcgaccattttgcatttgcagacgaggagccgttgaaggcctttaat
ttgctgctgggcgagctggagcaggacggacggattgtgctgacacgcacgaagcggtat
ggagtgccggaacggatggaccttctgcgcggacgcctgcaggcccatgcgaagggcttc
gccttcctcattccagacgaccgggatcatcccgatgtatatatccatgcgaatgatatt
aagagcgctatgaacggcgatatcgtgctggtgcgcgttacctccagaagccactccggc
ggcagaatggaaggcgaggttgtgcggatcgtgcgcagaggcgtgctgcagaccgtcggc
gtattccagagcctggagacgtacggattcgtgctgccggatgacaagcggattaaccgg
gatattttcatcccgaaggaatcgttcaatggagccgtggacggcgagaaggtcgtcgtg
cgtatcgtgaactacccggaaggccgggcggcggctgaaggggaaatcatcgaaatactg
gggcataaggatgatccgggcgtcgatattttatccgttatccgcaagcatcaactgccg
gaggcttttccggaagaggttatggccgaggcgaacgctgctccggattccatcacggaa
gaagagattgcgcagcagggacgccgcgatctgcggggactgaatatcgtgacgatcgac
ggcgaggatgccaaagacctggacgacgccgtcaacgtaggacgtttggagaacgggcat
tacacgctgggcgtgcatattgccgacgtcagctattatgtgcgggagaatgcccccctc
gacaaggaagcgtacgaccggggctgcagcgtgtatctggtggaccgcgtcattccgatg
ctgccgcaccggctgtcgaatggcatctgttcgctcaatcctcaggtggaccggctgacg
atgtcctgtacgatggaattcgacgagaatatgaaggtcgtgaagcatgatatttttaca
agcgtgattcgtacaaaagagcggatgacgtataccaatgtgcgtaaaatcctgatggac
gaggactccgagctgctggagcgctatgcgcctctgatcgaggacttcaagctcatgcgc
gagctggctatgaagctgcgggacgcccggatgtgccggggcgcggtggatttcgacttc
caggagagcaaaattatcgtggacgagaacggcaaagccgttgatattgtcaaaagagag
cgctcgatcgcggagcagatcatcgaggaattcatgctggcggccaatgagacggtggcg
gagcatttccactggctgaaggttccgttcctgtatcgaatccatgaagatccggacccc
gagaagctgcagaacttcatggcgttcgcggccaatttcggctaccatgtcaagggacgc
gggaactccgttcatcctcgggcgctgcagaagctgctggaggacattcagggcacgaag
gagcagacggttatcagcacaatgatgctacgctccatgaagcaggcgaagtacgatgca
gagagcacgggccactttggccttgctgccgagtattactcccacttcacgtccccaatc
cgccggtatccggaccttgttattcaccgtgtcatccgcgaggtgctggagggcggcgga
gcacttaccgagaagcgccaggagtacctggcgagccggatgccggacatcgcccagcag
tcctccgagcgcgagcgggttgcagtcgaagccgaacgggatacggagcagctcaagaag
gcggaatacatgcaggacaaggtgggcgaggaattcgacgcgatgatcagcagcgtgacg
agcttcggcatgttcgttgagctggaaaataccgtcgaaggcctgattcgtctcagtcat
ctgacggacgattattaccacttcgacgaaggccatatggcactgatcggtgagcgcacc
tcgaaggtgttccgcatcggcgacgaagtgaagattcgcgtcgccaaggtgaacatggac
gaccacacgatcgacttcgagctggtcgacatgaagccccgcgcggcaggcgagcaccgc
agcgggggctttggcggaggcggtcgcggcggccacggcagccgcgatcgcagaggcggc
cacggcgcagcggtcgcccacggccccggcggcggcaagggacgcaccgccggtaagggc
ggagccgcggcgggtggcagccgcggcaaacgcgggcgcggcgggcgcgtactcgccgcc
agcccggctgcaggcgccgccgagcgcagcggcggcgcgggcgcccgcagcccgagaggc
gaagccggggacgccgcgggcggaacgcgcggcatcagcttcggcttcggctcgggcaag
ggcggttatggcgcgcctcccggggcgcgcggggacgtgtacaccggtgtcagcggtgac
acgaagttccgcacccgcgaggatctcgggggcgactacggcggcaagtccggcggtaaa
ggccgccgcaagaagaagacgcagagcggcgtcttcatcggcgagtcggtaacgccgggc
agcggcgcgatcgaggccggctctggcaatggcaacggggagcgcaagaagcgcaagaag
aaaaagaaagagaaagcgaacaaataa
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