KEGG   Pseudomonas stutzeri 28a24: CH92_11295Help
Entry
CH92_11295        CDS       T03390                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pstt  Pseudomonas stutzeri 28a24
Pathway
pstt03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pstt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CH92_11295 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pstt03400]
    CH92_11295 (ligD)
Enzymes [BR:pstt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CH92_11295 (ligD)
DNA repair and recombination proteins [BR:pstt03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CH92_11295 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AHL75658
UniProt: W8R7U3
LinkDB All DBs
Position
complement(2388856..2391414)
Genome map
AA seq 852 aa AA seqDB search
MALDEYNRKRDFAATPEPGGESKTKGKRGASHALQYCIQKHDASRLHYDFRLELDGTLKS
WAVPKGPSLDPKSRRLAVHVEDHPLDYATFEGTIPAGHYGAGDVIVWDRGVWIPQGDPEE
GYRKGKLKFTLEGEKLSGTWNLVRTRMDGGKEQWFLIKSNDDAARPEQEYDVVKEQPDSV
LSDRTLIPRKRGKAKLETDAKPVKAPAARTRTKTTHTALSGACSAPIPDTIKPQLATLVD
SVPDGDWRYEIKFDGYRIMARIESGKVQLFTRNGHDWTAKMPQQAEALAALGLESAWLDG
EVVVPNEDGTPDFQALQNAFEVGRSGTIVYYLFDMPYLNGMDLREVPLEQRRAALEQLFQ
KNDSELLRFSADFTEEPESVLESACQMKLEGLIGKRAGSTYVSKRSNSWVKIKCKNRQEF
VIVGFTDPKGSRSGFGALLLGLHNEEGELHYAGKVGTGFNQVTLKSLHAKLKPLEIDKSP
LAKAPPAADVRGAHWLEPKLMCEVAYAEMTRQGVIRHSVFHGLRSDKPAEAITQERPAKA
DKAATSHQPKSSTTKNTAGKIKISNPERIIDKSIGATKMELARFYAEVAPWALPQLRHRP
LALVRAPEGIDGELFFQKHTEKLSIPHITQLDTALFPDHAALMTIDTPEALVSAAQMGTI
ELHTWNAVAPVLDHPDRFVLDLDPDPALPWKRMIEATQLTQTLLDEIGLQSFLKTSGGKG
LHILVPLEPVHGWSEVKAFSQAIAQYMAKLLPQHFSAVSGPKNRVGRIFIDYLRNSQGAS
TVAAYSVRAREGLGVSVPIHRDELAELKGANLWTIRNLMPRLEEQGDDDPWTGINETGQR
ITADMRERLGMK
NT seq 2559 nt NT seq  +upstreamnt  +downstreamnt
atggccctcgatgaatacaaccgaaagcgagatttcgccgcgacacccgaacctggtgga
gagtcgaagacgaagggcaagcgcggcgccagccacgcactgcaatactgcatccagaag
cacgatgcgagccgcttgcattacgatttccggcttgaactcgacggcacgctgaaaagc
tgggcggtgcccaaggggccatcactggaccccaaatcgcgccgactggccgtacacgtc
gaagaccatccgctggattacgcgacctttgagggcaccattccggcaggtcattacggt
gcgggtgatgtgatcgtgtgggaccgaggggtctggattccacagggggatccagaggag
ggctatcgcaagggcaaacttaaattcacgctggaaggggaaaagctcagcggcacttgg
aatttggtgcgcacccgcatggacggcggcaaggaacagtggtttctgatcaaatcaaac
gacgacgcggcgcggcccgagcaggaatacgacgtcgtcaaggagcagcccgacagcgtg
ctcagcgaccgcacactgattccgcgcaagcgcggcaaggcgaagctcgaaaccgacgcc
aagccggtcaaggcgcccgccgcacgaacgcgcacgaagacgacgcacaccgccctgtcg
ggagcttgttccgcacccatacccgacaccatcaaaccgcagctggccacgctggtcgat
tcggtgcccgacggtgattggcgttatgagatcaagttcgacggctaccggatcatggcc
aggatcgaatccggcaaggtgcagctgttcactcgcaacggccacgactggacggccaag
atgccgcagcaagccgaagccctggccgcgctcgggttggaatcggcctggctggacggc
gaagtggtggtgcccaacgaggacggcacgcccgatttccaggcgctgcagaacgccttc
gaggtcgggcgcagcggaaccatcgtctactacctgttcgatatgccgtacctgaacggc
atggatctacgcgaagttcctctggaacagcgtcgagcggcgctggaacagctattccag
aagaacgacagcgagctgctgcggttttccgccgatttcacagaggaaccggaaagcgtg
ctggagagcgcctgccagatgaagctcgaaggcctgattggcaaacgcgccggcagcact
tacgtctccaaacgcagcaacagctgggtgaagatcaagtgcaagaatcgccaggagttc
gtcattgtcggtttcaccgaccccaagggctcgcgcagtggtttcggtgccttgttgctg
gggctgcataacgaagaaggcgaattgcactacgcgggcaaggtgggcaccggtttcaac
caggtcacgctaaagagccttcacgccaagctcaaaccactggaaatcgacaagagcccc
ctggccaaggcaccacccgctgcggatgtgcggggcgcgcattggctcgagccgaagctg
atgtgtgaagtcgcttacgcggaaatgacccggcagggtgtgattcgccattcggtattt
cacgggctgcgttccgacaagcccgctgaagccatcactcaagaacgcccggcgaaggca
gataaggcggcgacgtcacaccagcccaagagcagcacgacgaagaacaccgccggcaag
atcaagatctcgaatccagagcgcatcatcgataaatccattggcgcgaccaagatggag
ctggcgcgcttctacgccgaggtggcgccctgggcgctgccgcaactgcgccataggccg
ctggcgctggtgagggcgccggaaggcatcgatggcgagctgttcttccagaaacacacc
gagaaactgagcatcccgcacattacccagctggacaccgcgctattccccgatcatgcc
gcgctgatgaccatcgacacgccggaggcgttggtcagcgccgcccagatgggcaccatc
gaactgcacacctggaatgcggtggcgccggtgctcgatcatccggatcggttcgttctg
gacctggaccccgacccggcgctgccatggaaacgcatgatcgaagccacccagctgacc
cagaccctgctggacgaaatcggtctgcaatccttcctcaagaccagcggcggcaagggc
ctgcacattctggtgccgctcgaaccggtgcatggttggagcgaggtgaaggcgttcagc
caagccatcgcgcaatacatggcgaagctgttgccgcagcatttctctgcggtgagcggg
ccaaagaaccgcgttgggcgaattttcatcgactatctgcgcaacagtcagggcgccagt
accgttgccgcgtactcggtacgagcacgtgaggggctgggggtctcagtgccgattcac
cgtgacgagctcgccgagctcaagggggcgaatctctggaccatccgcaatctcatgcca
cggctggaagagcagggcgatgacgacccctggaccggcatcaacgagacggggcaacga
attactgcggacatgcgcgagcggctggggatgaaatag

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