KEGG   Pedobacter steynii: BFS30_17235Help
Entry
BFS30_17235       CDS       T04469                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psty  Pedobacter steynii
Pathway
psty03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psty00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BFS30_17235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psty03400]
    BFS30_17235
Enzymes [BR:psty01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BFS30_17235
DNA repair and recombination proteins [BR:psty03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BFS30_17235
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AOM78765
UniProt: A0A1D7QJB2
LinkDB All DBs
Position
4180295..4182910
Genome map
AA seq 871 aa AA seqDB search
MSLTEYKKKRSFKKTPEPSGGKGTGKELRFVIQKHDASHLHYDFRLEMEGVLKSWAVPKG
PSTDPDVKRLAMMVEDHPYDYRNFEGIIPKDQYGGGTVIVWDEGTYSPAEPESDDLKKQE
KQLLQELKNGKLKINIKGKKLKGIYALIKAYGRGENSWLLMKLEDKYAGQSDILLKDKSV
LSRKTIAQMEKRPDHVYGSTQEKVTKALEKKVKIVESGGSRLKDLLKKAVKKPFFEWVEP
MLTTLVNEPFDEPGWIYEIKWDGYRAVAFMNKGEVSLKSRNDKPFEKKFYPVYEQLKEWG
INAIIDGEVVVVNEKGKASFGALQNWRNESDGELLYYVFDVLWYNGYDLTHLPLVDRRAI
LAELIPEKSSILLSKSFETSGIEFLSAVKHMGLEGIIAKRAESIYNSGGRTTDWLKIKAS
RGQEAVIGGFTKNENSNKPFSSLLVGLFKQGKFIYTGKVGAGFNIDTQKELLTQFQPLII
AQSPFAEEPDVNKPNRFSFGSPKARATWLKPELICEVNFAEMTTDGVMRHPSFKGMRVDK
NAKEVVLEKAVDADKIIPDFINPKDMFITKGEETEVKKVNRHELTFTNLSKIYWPVEKIS
KRDLINYYEQISPFILPYLKDRPQSLNRYPDGITGQNFYQKDVTGKVPDWIKTYLYHAEG
DDTDKHFLVGNDKATLLYMASLGCIEMHPWSSTIKKPDHPTWCIIDLDPDKNSFDQVIET
ARVTKAVLDDMGVPGYCKTSGSTGLHIYIPLGNKYTYEQSKEFARIIVTLVNRELPGFTS
LERTIADRKGKMYLDYLQNRSQATIAAPYSLRPKAGATVSMPLHWDELEKGLQMKDFNIF
NAVSRANKLGDIFKPVLGKGVDLMKIIKKNR
NT seq 2616 nt NT seq  +upstreamnt  +downstreamnt
atgagtcttactgaatataaaaagaagcggtcttttaagaaaacccccgagccaagcgga
gggaagggaactgggaaagaattgcggtttgttattcagaaacacgatgcttctcatctg
cattatgactttcgtttggaaatggagggggtgttaaaaagctgggcggtcccaaagggc
ccctccacagatcctgacgttaagcgcctcgcgatgatggttgaagatcatccctacgat
taccggaattttgaaggaatcattccgaaagatcagtatggaggcggaactgttattgtt
tgggatgagggaacttattcgcccgccgaacctgagtctgatgatttgaaaaaacaggaa
aagcaattgctgcaagaattaaaaaatggaaaacttaaaatcaatataaaaggtaaaaag
ctcaagggaatttatgcgttgataaaggcttacggcagaggcgaaaacagctggctcctc
atgaaactggaggataaatacgcagggcaatcggatattcttctaaaagataaatcagtt
ctttccaggaagaccattgcccagatggaaaagaggccagaccatgtttatggatctact
caggaaaaagtaacgaaagcacttgaaaagaaagttaaaatcgttgagtctgggggtagc
aggttgaaggatttgctcaaaaaagcagtgaaaaaacctttttttgagtgggttgaacct
atgttgacgaccctggtgaatgaaccttttgatgagcctggatggatatatgagatcaaa
tgggatggctatagggcagttgcttttatgaataagggagaggtttccttaaaatccagg
aacgataagccttttgagaagaagttttatccggtatacgagcaattgaaagaatgggga
attaatgcgataatagatggtgaggtagtggtggtcaatgaaaaaggaaaggccagtttt
ggtgcattgcagaattggcgtaatgaatcggatggcgaactcctttattatgtttttgat
gttctctggtataatggatatgatctgacccatttacctttagttgatcgcagagcgatc
cttgcagaacttatcccggaaaaatcgtccatcttgctcagtaaatcttttgaaacatct
ggtatagaatttctcagcgctgtaaaacatatggggctggaaggaatcattgcaaaacga
gctgaaagcatatacaatagcggaggccggacaaccgattggttaaagatcaaagccagc
agagggcaggaggcggttattggtggtttcacaaaaaatgaaaatagcaacaaacccttt
agttctctgttagttgggctttttaagcaggggaaatttatatataccggaaaagttggc
gccggtttcaacatcgatacccaaaaggagttgcttactcaatttcaaccgctgatcatc
gctcaatctccttttgcggaggaaccggatgtgaataagccaaaccgtttcagttttggt
tccccaaaagcgagggccacctggttaaaaccggagctgatttgtgaggtcaattttgca
gagatgaccacagacggtgtcatgaggcatccttcttttaaaggaatgagagtagataaa
aatgcaaaagaagtggtgttggaaaaagcagttgatgcggataaaattattcctgacttc
attaatcctaaagatatgttcatcacaaaaggcgaagaaacagaagtgaaaaaggtaaac
aggcatgaattaacatttactaacctcagtaaaatatactggccggtagaaaaaatcagt
aagcgggacctgattaattattatgaacagatttccccttttatcctgccttatctgaaa
gaccgtccgcaatctttaaatcgctatcctgatgggattaccgggcaaaatttttatcag
aaagacgtcacgggaaaggtgccggactggatcaaaacttatttgtatcatgctgaagga
gacgacactgataaacatttcctggtggggaatgataaagcaactttattgtatatggcc
agtttgggttgtattgaaatgcacccctggagcagcaccattaaaaaaccggatcatcca
acctggtgtattatagacctcgatcccgacaagaattcttttgatcaggttattgagact
gcgcgggtaaccaaagctgttttagatgatatgggggtaccaggatattgtaaaacaagt
ggatcaacaggtttacatatttatattcccctcggtaataaatacacctatgaacagagt
aaggagtttgcacggattatcgttacactcgttaaccgggaactgcctggatttaccagt
cttgaacgaactattgccgaccgcaaagggaaaatgtatctggattacctgcaaaaccgg
tcacaggctactatagctgccccttattccctgcggcctaaagcaggcgccactgtttct
atgcctttacattgggatgagctggaaaaggggctgcaaatgaaggactttaacatcttt
aatgcggtatcgagggcaaataagctgggcgacatttttaagccggtacttggaaagggt
gttgacctgatgaaaattattaaaaagaaccgctaa

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