KEGG   Pedobacter steynii: BFS30_18490Help
Entry
BFS30_18490       CDS       T04469                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
psty  Pedobacter steynii
Pathway
psty03030  DNA replication
psty03410  Base excision repair
psty03420  Nucleotide excision repair
psty03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psty00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BFS30_18490
   03410 Base excision repair
    BFS30_18490
   03420 Nucleotide excision repair
    BFS30_18490
   03430 Mismatch repair
    BFS30_18490
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psty03032]
    BFS30_18490
   03400 DNA repair and recombination proteins [BR:psty03400]
    BFS30_18490
Enzymes [BR:psty01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BFS30_18490
    6.5.1.6  DNA ligase (ATP or NAD+)
     BFS30_18490
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BFS30_18490
DNA replication proteins [BR:psty03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    BFS30_18490
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     BFS30_18490
DNA repair and recombination proteins [BR:psty03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BFS30_18490
   NER (nucleotide excision repair)
    Other NER factors
     BFS30_18490
   MMR (mismatch exicision repair)
    Other MMR factors
     BFS30_18490
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AOM78981
UniProt: A0A1D7QJY0
LinkDB All DBs
Position
complement(4472560..4474152)
Genome map
AA seq 530 aa AA seqDB search
MKRFTALIAQLELSNKTNDKIAALVRYFNEAEDLDKPYVIAMFTGKRPRRPVSTALMKEW
AINLSGIPAWLFAESYHSVGDLSETIALILPPPTSTTDLPLHQWINALAALNGQDDESKK
RFIERAWDSLDMQERFVFNKLISGNFRIGVSNKMLVNALAKQSDLESNQIMHSIMGKWKP
DEISYQELIAGAHVDTDRSWPYPFCLAYALDTEPQSLGNIKEWQAEWKWDGIRGQIVKRG
GELFIWSRGEELVTDQFPELHFLIDHLEDGTVLDGEILSVKEGKIQPFSLLQQRLNRKTI
SKAQLLAAPIAFYVYDLLEYQGADQRGKTLQVRRDQLTTVIKNTGNQEAIVISPVINVES
WEALALLRADSRLQNSEGLMLKKLDSLYHSGRKRGDWWKWKINPYTVDAVMIYAQKGSGR
RANFFTDYTFAVRDGEQLITIAKAYSGLTDQEIKEVDAFVRKNAIEKFGPVRTVKPELVF
EIAFEGIAESKRHKAGLALRFPRIARWRKDKKAAEINTLEDLRQLLQSTL
NT seq 1593 nt NT seq  +upstreamnt  +downstreamnt
ttgaaacgttttaccgcactgatcgctcagctggaattgagcaataagaccaacgataag
atcgctgccctggttcgttattttaatgaagcagaggacctggacaaaccatatgtgatc
gccatgtttaccggaaaaagaccccggcgaccagtcagcacagcgcttatgaaagagtgg
gccatcaacctgagtggtatcccagcctggttatttgcagaaagttaccacagtgtaggt
gacctcagtgaaaccattgcgctgatccttccccctcctacaagcaccactgatcttccc
ttacaccaatggatcaatgcacttgcagcgctcaatggtcaggatgatgaaagcaagaaa
agatttattgagcgcgcctgggacagcctggatatgcaggaaagattcgtctttaataag
ctcatttccggcaatttcagaatcggcgtttccaacaagatgctggtcaatgcgctggca
aaacaaagcgatctggaaagcaatcagattatgcacagcattatgggcaagtggaaacct
gatgaaatcagttatcaggaactaattgccggtgcacatgtagataccgaccggtcctgg
ccctatcctttttgccttgcttatgctttggatacggaaccacaatctctcggtaacatt
aaggaatggcaggcagaatggaaatgggatggcatccgcggacaaattgtgaaacgcggc
ggagaactcttcatctggtcgcggggggaagaacttgtaaccgatcagtttccggaatta
catttcctcatcgatcatctggaagacgggactgtgctggatggagaaattctttctgtt
aaagaaggaaaaatacaacctttcagccttcttcagcaacggctaaacagaaaaaccatt
tccaaagcacagctgctggcggcaccgattgccttttatgtttatgatcttctggaatat
cagggggccgaccaaagaggaaaaaccctgcaagtccgaagggatcaacttactacagtc
ataaaaaataccggaaatcaggaggcaattgtcatttcgcctgtaatcaatgtggaatcc
tgggaggctcttgccttgttaagagctgattccagattacagaacagtgaaggactcatg
ctcaaaaaactcgactccctttaccatagcggcagaaaaagaggtgactggtggaaatgg
aaaatcaatccgtatacggtagatgccgtcatgatatatgctcagaaaggtagtggcaga
agggcgaattttttcaccgattatacttttgccgttcgtgatggagaacagctcattacc
attgccaaggcttattccgggctaaccgatcaggagatcaaagaggtggatgctttcgtc
aggaaaaatgccatagaaaaatttggtccggtacgtaccgtaaaacctgaacttgtgttt
gaaattgcttttgaaggaattgccgaaagcaagcggcataaagctggcctcgctttacgc
tttccaaggattgcccgatggagaaaagataaaaaagcagcagaaatcaatacattggaa
gacttaagacaattgttgcagtcgaccttataa

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