KEGG   Pseudoxanthomonas suwonensis 11-1: Psesu_1057Help
Entry
Psesu_1057        CDS       T01403                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
psu  Pseudoxanthomonas suwonensis 11-1
Pathway
psu03030  DNA replication
psu03410  Base excision repair
psu03420  Nucleotide excision repair
psu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Psesu_1057
   03410 Base excision repair
    Psesu_1057
   03420 Nucleotide excision repair
    Psesu_1057
   03430 Mismatch repair
    Psesu_1057
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psu03032]
    Psesu_1057
   03400 DNA repair and recombination proteins [BR:psu03400]
    Psesu_1057
Enzymes [BR:psu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Psesu_1057
    6.5.1.6  DNA ligase (ATP or NAD+)
     Psesu_1057
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Psesu_1057
DNA replication proteins [BR:psu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Psesu_1057
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Psesu_1057
DNA repair and recombination proteins [BR:psu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Psesu_1057
   NER (nucleotide excision repair)
    Other NER factors
     Psesu_1057
   MMR (mismatch exicision repair)
    Other MMR factors
     Psesu_1057
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M Bd3614_N
Motif
Other DBs
NCBI-ProteinID: ADV26907
UniProt: E6WRV8
LinkDB All DBs
Position
complement(1199425..1200288)
Genome map
AA seq 287 aa AA seqDB search
MRFLLLALLCLLPASVLPAVPPTTAPAPAPMLASTWRGGLAVDAFLVSEKLDGVRARWDG
RRLWTRGGAPIVPPAGFTRGWPSQPMDGELWAGRGRFEEVSALVRRSSGDARDWDSVRFM
LFDLPAHPGSFARRVQYMRELVAKARSPTLAMIEQRRIATTAALDAELARVVAAGGEGLM
LHRADALYRPGRSDALFKYKPHADAEAQVVAHLPGKGRLEGRLGALQVRTPDGRSFRIGS
GFSDAQRADPPPIGSWVTYRYSGLTSKGLPRFPRFLRIRHELPPADP
NT seq 864 nt NT seq  +upstreamnt  +downstreamnt
atgcgtttcctgctgctcgccctgctctgcctgctgccagcttccgtgctgccggccgtc
ccccccactacggcgcccgcgcctgctccgatgctggcctcgacctggcgcggcgggctc
gcggtggacgccttcctggtcagcgagaaactggacggcgtgcgtgcccgctgggatggc
aggcggctgtggacccgcggcggcgcgcccatcgttccacctgccggcttcacccgcggc
tggccttcccaaccgatggatggcgagctgtgggccgggcgtggccgcttcgaggaagtc
agcgcgctggtgcgccgcagtagcggcgacgcgcgcgactgggacagcgtgcgcttcatg
ctgtttgacctgcccgcccaccccggcagcttcgcccggcgcgtccagtacatgcgcgag
ctggtcgccaaagcgcgcagcccgaccctggccatgatcgaacagcggcgcatcgccacg
accgcggcgctggatgccgaactggcgcgggtggtggccgcgggcggcgagggcctgatg
ctgcaccgggccgatgcgttgtaccggcccggccgcagcgacgcactgttcaagtacaag
ccgcacgcggacgccgaggcccaggtcgtcgcacacctgcccggcaagggccgccttgag
gggcgcttgggtgcgctgcaggtgcgtaccccggacgggcgcagcttccgcatcggcagc
ggcttcagcgacgcgcagcgcgccgatccgccgcccatcggcagctgggtcacctaccgc
tacagcggcctcaccagcaagggactgccacgcttcccgcgtttcctgcgtatccgccat
gagcttccaccggcggatccgtag

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