KEGG   Pseudarthrobacter sulfonivorans: AU252_08335Help
Entry
AU252_08335       CDS       T04210                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psul  Pseudarthrobacter sulfonivorans
Pathway
psul03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AU252_08335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psul03400]
    AU252_08335
Enzymes [BR:psul01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AU252_08335
DNA repair and recombination proteins [BR:psul03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AU252_08335
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ALV41157
UniProt: A0A0U3QNI2
LinkDB All DBs
Position
1883066..1885591
Genome map
AA seq 841 aa AA seqDB search
MAGPKERVRVAGRELTLTNLDKIIYPETGTTKADVLAYYAAVAHFLIPAAANRPATRKRW
VNGVGTAGHPGEVFFQKNLEDSAPGWLPRAAITHKDRTIYYPMVNDPATLTWFGQINSLE
IHVPQWQVDSHGKQLNPDRLVLDLDPGDGAGLEECAEVALLARAILQDVGLEPVPVTSGS
KGIHLYAGLDGTQTSDQISDFAHELARALEADHPDLAVSDMKKTLRKGKVLVDWSQNSAA
KTTIVPYSLRGRLTPTVAAPRTWQEIGSPKLQHLDYTAVLRRVKAGKDPFAAVASGAGHP
GDAGNPRAKTDDGGAHARLERYRSMRDPNATPEPFSGASGNGDTFVIQEHHASRLHFDFR
LEHEGVLVSWALPKGVPESGGKNHLAVQTEDHPLDYATFEGTIPKGQYGAGEVTIWDHGT
YELEKWINGREVIATLTGAEGGGLGGTKKFALIHTGRGQGRDSEGQWLIHLMDKDHHTFH
PRRAPVEDEPAEGEPAADSAADASGAEPAADVSPAAAAPSPLRAEDFGPMMATSGSAADL
HGSDWQFELKWDGVRGLLVADEKKIRIFSRNGIDVTTTYPELTDRTCWPAGPFVADGEII
AVGPSGKPDFGLLQGRMKLTRPADVAKARAAIPVRLMLFDLLSDGGEDLRRLPFAKRRLR
LEEFHHPSECPVELSAVLDERIEHILESAQELGLEGVMAKRTDSRYVSGQRTRTWIKIKL
EQTQEVVVGGWRPGKGGRQGSVGSLLVGIPDGNKLRYVGRVGSGFSMRELEELRQKVDDL
ARKTSPFDDVPREDASDAHWVTPRLVGEVTFGQWTGSGKLRHPVWRGWRLDKTADEVVPE
G
NT seq 2526 nt NT seq  +upstreamnt  +downstreamnt
atggccgggcctaaagagcgcgtcagggtcgcggggcgggaactgaccctcaccaacctg
gacaaaatcatctacccggagaccggcaccaccaaggccgatgtcctggcctattacgcc
gccgtggcccattttctgattcccgccgcggccaaccggcccgccacccgcaagcgttgg
gtcaacggcgtgggcaccgccgggcatcccggcgaggtgtttttccagaagaacctggag
gattcagcgccgggctggctcccccgcgccgccatcacgcacaaggaccggaccatctac
tacccgatggtgaacgatcccgccacgctcacctggttcggccagatcaattcgctggaa
atccatgtcccccagtggcaggtggactcccacggcaagcagctgaacccggaccgcctg
gtcctggacctcgatcccggcgacggtgccggacttgaggaatgcgccgaggttgccctt
ctggctcgcgccatcctgcaggacgtgggcctggaaccggtgccggtgaccagcggcagc
aagggcatccacctctacgcgggcctggatggcacgcagacctccgaccagatctcggac
tttgcgcacgaactggcccgggcgctggaagcggaccacccggatcttgccgtgagcgac
atgaaaaagacgctgcgcaaaggcaaggtgctggtggactggagccagaacagcgccgca
aagaccaccatcgtgccgtactccctgcgcggccgcctcacgcccacggtggccgccccg
cggacctggcaggagatcgggtctcccaaactgcagcacctcgactacacagctgtgctg
cgccgggtcaaggcgggcaaggacccgttcgccgccgtcgccagcggtgccgggcaccct
ggggacgccgggaaccccagggcgaagacggacgacggcggcgcgcacgcccgactggag
cggtaccggtcgatgcgggaccctaacgcgacgcctgagccgttctccggcgcctccgga
aatggggatactttcgtgatccaggagcaccacgcgagcaggctccacttcgacttccgg
ctggagcacgagggggtgctggtgtcgtgggccctgccgaagggcgtcccggaatccggc
gggaagaaccacctggcggtccagaccgaggaccaccccttggactacgccacgtttgag
ggcaccattcccaaaggccagtacggcgccggcgaagtcactatctgggaccacggcacg
tatgaactggagaaatggatcaacggccgggaggtcatcgccacgctgaccggcgccgag
ggcggcggcctgggcggcaccaaaaagttcgccctcatccacaccggccgcgggcagggc
agggattccgaaggacaatggctcatccacctgatggacaaggaccaccacacctttcat
ccgcggcgggctccggtggaggatgaaccggcggagggtgagccggcggcggattcggcg
gcggacgcttccggggctgagcctgccgcggacgtttccccggccgctgccgcgccttcc
ccactgcgtgctgaagatttcggccccatgatggcaacgtccgggtccgccgccgacctg
cacggcagcgactggcagttcgaactgaagtgggacggcgtgcgtggcctgctggtcgcg
gacgaaaagaaaatccggatcttcagccgaaacggcatcgacgtcaccacaacctacccc
gaactgacggaccggacctgctggccggcgggcccgttcgtcgccgacggcgagattatc
gccgtcgggccttccggcaaacccgatttcgggctgctccagggccgcatgaaactgacc
cggcccgccgacgtcgccaaagcccgcgcagcaatccctgtccggctgatgctttttgac
ctgctgtccgacggcggagaggaccttcgccggctgcctttcgcgaagcggcggctgcgg
ctggaggagttccatcacccgtcggagtgtcccgtggagctgtccgccgtcctggacgag
aggatcgagcacatcctggagagcgcgcaggagctggggctcgagggcgtgatggccaag
cggaccgacagccgctacgtcagcgggcagcggacccggacgtggatcaagatcaagctg
gaacagacccaggaagtggtggtgggcggttggcggccaggcaagggcgggcggcaaggt
tcggtgggttcgttgctggtgggcatccccgacggcaacaagctgcggtacgtgggccgg
gtgggcagcgggttcagcatgcgcgaactggaggaactccgccagaaggtggacgatctg
gcgcgcaagacgtcaccgttcgatgacgttccccgcgaggatgcctcggacgcccattgg
gtgacgccacggctggtcggcgaggtgaccttcggccagtggaccgggagcgggaagctc
aggcatccggtttggcggggctggcggctggacaagaccgctgacgaagtggtgccggag
ggctga

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