Pseudomonas sp. VLB120: PVLB_03135
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Entry
PVLB_03135 CDS
T02897
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03030
DNA replication
psv03430
Mismatch repair
psv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PVLB_03135 (holA)
03430 Mismatch repair
PVLB_03135 (holA)
03440 Homologous recombination
PVLB_03135 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psv03032
]
PVLB_03135 (holA)
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_03135 (holA)
Enzymes [BR:
psv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PVLB_03135 (holA)
DNA replication proteins [BR:
psv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PVLB_03135 (holA)
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PVLB_03135 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
AGZ33434
UniProt:
A0AA86DV66
LinkDB
All DBs
Position
complement(717073..718110)
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AA seq
345 aa
AA seq
DB search
MKLSPAQLNKHLQGALAPVYVVSGDDPLLCQEAADAIRTAARQQGFDERQVFSADANFDW
GTLLQAGASLSLFAQRRLLELRLPSGKPGDKGASALMEYCAKPAEDTLLLISLPKLDGSA
QKTKWGKALIEGPHCQFIQIWPVDTQQLPQWINQRLSQAGLSAQRDAVDLIAARVEGNLL
AAAQEIEKLKLLAEGNQITVETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGE
GVEPPVILWALARELRLLAGLAQQFSQGVPLDKAFSQARPPVWDKRRPLVSKALQRLTAQ
RWAQLLQDAQRIDAQIKGQAEGSPWTGLARLSLLMAGQRLVLPPE
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaagctctcccccgcccaactcaacaagcacctgcaaggtgccctggcgccggtctat
gtggtcagcggtgacgatccgctgctgtgccaggaggccgccgatgccatccgtaccgca
gcccgtcagcaaggcttcgacgaacgccaggtgttcagtgccgacgccaacttcgactgg
ggcaccctgctccaggcgggcgccagcctctccctgttcgcccagcgccgcctgctggag
ttgcgcctgccctcgggcaagcccggcgacaagggcgccagcgcgctgatggagtactgc
gccaaacctgccgaggacaccctgctgctgatcagcctgcccaagctggacggcagcgcg
cagaagaccaaatggggcaaggcgctgatcgaagggccccactgccagttcatccagatc
tggccggtggatactcagcaactgccacagtggatcaatcagcgcctgtcccaggctggc
ctgtcggcgcagcgcgatgccgtcgacctgatcgccgcacgggtcgagggcaacctgctg
gccgccgcccaggaaatcgaaaagctcaagctgctcgccgaaggcaaccagatcaccgtc
gaaaccgtgcaggcggcagttgccgacagcgcccgcttcgacgtattcgggttggtcgat
gccattctcaatggcgaggcagcccacgccctgcgcatgctcgaaggcctgcgtggcgaa
ggtgtcgagccacccgtgatcctctgggcgctggcccgcgagttgcggttgctggcgggc
ctggcgcagcagttcagccaaggcgtgccgctggacaaggccttcagccaggcgcgaccg
cccgtgtgggacaaacgccgccccttggtcagcaaggccctgcagcgtctcaccgcgcag
cgttgggcgcaattgctgcaggacgcccagcgtatcgatgcgcagatcaagggccaggcc
gagggctcgccatggacggggcttgccaggctatcgctgttgatggccggacagcgtctg
gtcctgccccccgaatga
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