Psychrobacter sp. P11G5: AK825_08525
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Entry
AK825_08525 CDS
T04411
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psyg
Psychrobacter sp. P11G5
Pathway
psyg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AK825_08525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyg03400
]
AK825_08525
Enzymes [BR:
psyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AK825_08525
DNA repair and recombination proteins [BR:
psyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AK825_08525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMN67740
UniProt:
A0A127GZL1
LinkDB
All DBs
Position
complement(2115249..2118959)
Genome browser
AA seq
1236 aa
AA seq
DB search
MSITALTDAFAPINQQLFPIQNSQRRWLAPVHGAVGSLWLASLVKTPIWEMADRLKVVVA
RDQNQLNQIETELAFCGVDAYVFPDWETLTYDELSPHQDIVSERINLLTDMPTSGVLLIS
VQALMHRVAPPSWLIGQHFDLSIGDQFDINTQRELLAKAGYRAVENVFEPGEFAVRGSII
DIFAMGQPFPLRLDLFDDEIETIRFFHPQTQRTLTNDDLKAMMSGNDSSMGQESLSLLHK
LPDISKPIQKFQILPAKEFPLEEGKETFRMNFAEMFPNASSRKFELHKDVMAGIASSGLE
YYQPLFFDLKDWQQESSLFTYLPEDALFITDELINERQADYWSQIQRRYEERRHDIDKPI
VAPELLYLLSSTLNEHLNKYPRVILSAREELASMTDVAAIDDAQAAPTSASAPMQNKQGL
VTLSTQVPPQLSVNHQKAEPLAELLDFLHLQAETATPVLIVAETAGRREILIELFKGKID
VKAYDSFKEFLAADRTSAVNSSNKPYVGLTVAPIERGVYVPERLVLISETQLFGRQVLQT
RRRRQSGVSEEFLVKSVTEMTQGSPIVHIEHGIGRYNGLIILDVGEGEQEFIHLKYADDA
SIYVPVANLQMISRYSGGDPALAPLHKIGSGKWDKAKQKALQQIHDVAAELLNMQARREA
KVGIHFKIDISQYELFASQFAFEETPDQANAIHAVMEDMKQNQPMDRLICGDVGFGKTEV
AMRAAFIAVSAGYQVAVLVPTTLLAGQHEDNFRDRFADWPVRVETLSRFGGKKHQDTVLA
DLAAGKVDIVIGTHKLLQPDVKFTNLGLMIVDEEHRFGVRHKERIKAIQTDVDSMSMTAT
PIPRTLNMALSGMRDMSIIATPPARRLAIKTFVMQKTEALMKEAILRELLRGGQVYLLHN
DVASIERMAETIRELVPEARVGVAHGQMQERQLEQIMQQYYHKKFNVLICTTIIETGIDV
PNANTIIIERADKFGLAQLHQLRGRVGRSHHQAYCYLLVPSIKGLKGDAKRRLHAIERAN
TLGAGFMLASEDLEIRGAGEILGKQQSGNMQAIGFSLYMDMLERATKAIKAGKEPDLNTP
LSLTSEINLHSSALIPEEYLHDVHQRLLFYKRISNADDKEILIDIRTEMIDRFGILPDQT
KHLFAIHGLRLQAEPLKINKIDANSNSMTLEFAPDTPVDALAIIKLIQSDGQRYRMNGAS
GIRYSDADKLETPQQRVTVIQELLRYFSEHMVAEPA
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgtctatcactgctttaaccgacgcctttgctcctattaatcagcagctatttcctatc
caaaactcgcagcgacgctggctggcacctgttcatggtgcagtcggtagtctatggctg
gccagtttggttaaaacacccatatgggagatggcagatcgtctaaaagtcgttgtggct
cgggatcaaaatcagctcaatcaaatagaaactgagctggctttttgcggtgtggatgct
tacgtgtttccagattgggagaccttgacttatgatgaactgtctccgcatcaagatatc
gttagcgagcggattaatctattaacggatatgccaacgtcaggtgtgttacttatatca
gtacaggctttgatgcatcgtgttgcaccgcccagttggctgattggacaacactttgat
ttaagcattggtgatcaatttgatattaatacccaacgtgagctactagcaaaggctggt
taccgcgcagttgaaaatgtgttcgaacctggtgaatttgcggtacgtgggagcattatt
gatatttttgcgatggggcagccatttcccctgcgtttagatttatttgatgatgagatt
gagacgattcgtttctttcatccacagactcagcgcacactaactaatgatgatctaaaa
gcaatgatgtcaggtaatgacagtagtatgggtcaagagtcgctgtcgctactgcataaa
ctgccagatatctctaaacctattcagaagtttcaaatcttaccagcaaaggaatttcct
ttagaagaggggaaagaaacttttcgcatgaactttgctgagatgttcccaaatgctagc
agccgtaagtttgagctgcacaaagatgtgatggcagggattgccagtagtggacttgaa
tattaccagccattattttttgatctaaaagattggcagcaagaaagtagtttattcact
tatttacctgaggatgctttattcatcacagatgagctaatcaatgagcgccaagcggat
tactggtcgcaaatccagcgccgctatgaggagcgccgtcatgatattgacaagcctatc
gtggcacctgagctattatatttactatctagtactctcaatgagcatctaaacaagtat
ccacgggtaatattgagcgcgcgagaagaacttgcatctatgacagatgtggccgctatc
gatgatgcgcaagcagcgccaacatctgcgtctgctccgatgcaaaataagcaaggcttg
gtgacacttagcactcaagtaccgccgcagctatcagtaaaccatcaaaaggcagaacct
ttagctgaactattggattttttacatctgcaggcagaaacggctacaccagtattaatc
gttgccgaaactgcaggtcgccgcgagattctcatagagctgtttaaaggtaaaattgat
gtcaaagcctatgatagctttaaagaatttttagcagcagataggacaagcgcagtaaat
tcgagtaataaaccatatgttggtctgacagtggcaccgatcgaacgtggagtctacgtt
cccgaacgtttggtactgattagtgagactcagctgtttggtaggcaagtactgcaaacg
cgtcgtcgtcggcaaagtggcgtatcagaagagtttctggttaaaagtgtcactgagatg
actcaaggcagtccaattgttcatatcgaacatggtattggtcgttataacggtttaatt
attctagatgtgggtgagggtgagcaagagtttattcatctgaaatacgccgatgatgcc
agtatttatgtgcctgtcgctaatttacaaatgattagtcgctatagtggcggtgatcct
gcgcttgcgcctttgcacaagattggtagtggtaaatgggataaagctaagcaaaaagca
ttacaacaaatacatgatgttgctgctgaattgctcaacatgcaggcaagacgagaagct
aaagtcggtattcatttcaaaatagacatctcgcagtatgagctgttcgctagtcaattt
gcctttgaagaaacgccagatcaggctaatgccatccatgctgtcatggaagatatgaag
caaaaccagccgatggatcgactcatttgcggtgatgtaggctttggtaaaacagaagtt
gccatgcgtgcggccttcattgcggtcagtgctggttaccaagttgcggtattggtaccg
actactttgctagcgggacaacacgaagacaacttccgcgaccgcttcgctgattggcca
gtacgtgtcgaaaccttatcgcgttttggtggtaaaaaacatcaagataccgtactggcg
gatttagctgctggtaaagttgatattgtgataggtacgcataagctgctacagcctgat
gttaagtttactaatttaggattaatgatagtcgatgaagagcatcgctttggcgtgcgt
cataaggagcgtatcaaggctatccagaccgatgtagatagtatgtctatgacagcaaca
ccgatacctagaacgctcaacatggcgctctctggaatgcgtgatatgtcgattattgcc
accccacctgcacgtcgtttggccattaaaacctttgtgatgcaaaagacagaagcttta
atgaaagaggctattttgcgtgagttgctacgcggcgggcaggtatatttattgcataat
gatgttgctagtattgagcgtatggcagagactatacgtgagctggtaccagaagcgcga
gtaggtgtggctcatggacagatgcaagaacgtcaacttgaacaaattatgcagcagtat
taccataaaaaattcaatgttttaatctgtacgactattatcgaaaccggtatcgatgta
cctaatgccaacaccattattattgagcgtgctgataaatttggtttggctcagctgcat
cagttgcgtggccgtgtcggtcgtagtcatcatcaagcgtattgttatctactagtaccg
tcaattaaaggtctcaaaggcgatgctaagcgccgattacatgctatcgaacgtgctaat
acgctgggtgcaggctttatgctggcaagtgaggatttagagattcgcggtgcaggtgag
atattgggtaaacagcaaagtggcaatatgcaggcgattggatttagcttatatatggat
atgttagagcgtgctactaaagctatcaaagcgggtaaagagccggatttaaatacaccg
ttatcgctgactagcgagattaatttgcatagctcagctttgatacctgaagagtatcta
cacgatgtgcatcagcgcttgttgttttataaacggatcagtaatgccgatgataaagaa
atcctgattgatattcgcactgaaatgattgatcgctttggtatactaccagaccaaacc
aagcatctattcgctattcatggtctgcgcttacaggcagagccattgaagattaataaa
attgatgccaatagtaatagtatgacgctggagtttgcaccagatacccctgttgatgcg
ttagcaatcattaaactgattcaatctgatggtcagcgttatcgcatgaatggcgcgtca
ggtattcgttatagtgatgcggataaacttgaaacaccgcaacagcgagtaacggttatc
caagagctgttacgctattttagcgagcatatggtagccgaacctgcatag
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