Psychrobacter sp. PAMC27889: E5677_02050
Help
Entry
E5677_02050 CDS
T06076
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psyp
Psychrobacter sp. PAMC27889
Brite
KEGG Orthology (KO) [BR:
psyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psyp03016
]
E5677_02050
Enzymes [BR:
psyp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
E5677_02050
Transfer RNA biogenesis [BR:
psyp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
E5677_02050
Prokaryotic type
tRNA splicing ligases
E5677_02050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QCB29868
UniProt:
A0A7Z2B5R5
LinkDB
All DBs
Position
473897..475111
Genome browser
AA seq
404 aa
AA seq
DB search
MSIQLVLNKNSKHGVPVKIYTTDVEQGAMQQLRNLAQLEFVHSHIAVMPDVHVGKGATVG
SVIPTKSAIIPAAVGVDIGCGMNAVRLSLTASDLPDSLKLLRSIVEQQVPVGFNLHKQIQ
AKNSTLDPLGKRLKPITDKHPGLLKMLKGFERTWAKQLGTLGGGNHFIELCLDENNDVWV
MLHSGSRGIGNCIGRYFINLAKKERQSRFGHVPDRDLSYFAEGSDSFADYVEAVGWAQDY
ALENRREMMRLVIKALQSPQAGLPRFQLTKEAINCHHNYVNEEVHFGEQVYVTRKGAISA
YAGELGIIPGSMGAKSFIVRGLGAAESFCSCSHGAGRQMSRGKAVRAFTIDELKAQTAGV
ECRKDKGVIDEIPGAYKDIDEVMANQRDLVEVVHTLKQVMCIKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgagcattcaattagtattaaataaaaatagcaaacatggcgtccctgtcaaaatatac
accaccgatgttgaacaaggtgccatgcagcaactacgcaacttggcccagttagaattt
gtacattcgcacattgctgtcatgcctgatgtccatgttggcaaaggcgcgaccgtcggt
agcgtgattccgaccaaatctgccattatacctgcggcagtcggtgtagatattggctgt
ggtatgaatgcggtacgattgtcgctgacagcaagtgatttgccggatagtttgaagtta
ttacgttcgatagtagaacagcaggtgccggtagggtttaacttgcataaacaaatccaa
gccaaaaactcgacgcttgatccgcttggcaaacgactgaaacctattaccgataagcat
ccgggtttactcaaaatgctaaaaggctttgagcgtacgtgggccaagcagctcggcacg
cttggcggtggcaatcatttcattgagctgtgtttggatgaaaacaacgatgtttgggtc
atgctgcattctggtagtcgcggtattggcaactgtatcggccgctattttatcaatctg
gccaaaaaagagcgccaatcacgctttggtcatgtgcctgatcgtgatttgtcgtatttt
gctgagggctctgacagctttgctgattatgttgaggcggtcggctgggcgcaggattac
gcgctagagaaccgccgcgagatgatgcggttggtgattaaggcgttgcaatcgccgcaa
gcaggactgccacgatttcagctgaccaaagaagccatcaattgccatcacaactacgtc
aatgaagaggtgcattttggcgagcaggtttatgtgacccgtaaaggcgcgattagtgct
tacgcaggtgagcttggcatcatccctggctctatgggcgcaaaatcttttatcgtccgt
ggtcttggcgcggcagaatcgttttgctcatgttcacacggggcaggtcggcagatgagc
cgaggtaaagcggtgcgcgcgttcaccattgatgagctaaaagcgcagacagctggggtt
gaatgtcgcaaagacaaaggcgtcatcgatgagataccgggcgcgtacaaagacattgat
gaagtgatggccaaccaacgagacttggttgaagtggtgcatacgctcaagcaagtcatg
tgtattaaaggctaa
DBGET
integrated database retrieval system
