KEGG   Pseudomonas stutzeri ATCC 17588: PSTAB_2018Help
Entry
PSTAB_2018        CDS       T01571                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psz  Pseudomonas stutzeri ATCC 17588
Pathway
psz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PSTAB_2018 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psz03400]
    PSTAB_2018 (ligD)
Enzymes [BR:psz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PSTAB_2018 (ligD)
DNA repair and recombination proteins [BR:psz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PSTAB_2018 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AEJ05299
UniProt: F8HAP9
LinkDB All DBs
Position
complement(2140831..2143386)
Genome map
AA seq 851 aa AA seqDB search
MALEDYQRMRDFAATPEPAGKARPKSRKSQALQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPGVRRLAVHVEDHPLEYATFEGNIPEGHYGAGDVIVWDRGVWTPQGDPQEGY
RKGKLKFSLEGEKLAGSWNLVRTQMDGKKEQWFLIKSRDEAAREESEYDIVTAEPDSVLS
DRTLVPRKRGAKARVAETPPAPVKAPAKKRTPVRRKAKVALEGAVPAELPEHFKPQLATL
VDTVPGGDWRYEIKFDGYRMLARIDSGEVRLFTRNGHDWTAKMPQQAAALAGLGLESGWL
DGEVVVPNEEGTPDFQALQNAFEAGRSGSILYYLFDMPYLNGMDLREVALEQRRAALREV
LERSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGSTYTSRRSSSWVKIKCSNRQ
EFIIVGYTQPKGTRTGFGALLLGLHDDNGELRYAGKVGTGFNHATLQSLHKKLKKLETDK
SPLAKAPPAADARGAQWLKPELMCEVAYAEMTRQGVVRHSVFHGLRTDKPAEAITHERAK
PVARAKPNVADKADALGSGRIKISNPERVIDPSSGITKIELARFYAQIAPWALPQLQNRP
LALVRAPEGITSELFFQKHADKLAIPHITQLDPALDPKHGALLVIDSAEALVGAAQMGTI
ELHSWNAVAPNLEHPDRFVLDLDPDPALPWKRMLEATQLTQTLLDEIGLASFLKTSGGKG
LHIVVPLDPVHDWSEVKSFSQAIARHLAKLLPSHFSAVSGPKNRVGRIFIDYLRNSRGAS
TVAPYSVRAREGLPVSVPIHRDELADLKGANLWTVRNLLERLQELGGDDPWASIGKTRQR
LTRKIRDRLNA
NT seq 2556 nt NT seq  +upstreamnt  +downstreamnt
atggcgctcgaagattaccaacgcatgcgtgacttcgccgccacgccggaacccgccggc
aaggcacggccgaagtcccgcaagagccaggcgctgcagtactgcatccagaagcacgac
gccacgcgtctgcattacgacttccgcctggaactggacggcaccctgaagagctgggcg
attcccaaggggccaagcctggaccccggcgtgcgccggctggccgttcacgtggaagac
cacccgctggagtacgccacctttgaagggaacatccccgaagggcattacggtgccggc
gacgtgatcgtctgggaccgtggcgtgtggacaccccagggcgacccgcaggagggctat
cgcaagggcaagctcaagttcagcctggaaggcgagaagcttgccggcagctggaacctg
gtgcgcacgcagatggacgggaagaaggagcagtggttcctcatcaaatcccgtgacgag
gcggcgcgcgaggagagcgagtacgacatcgtcaccgccgagcccgacagcgtgctcagt
gaccgcactctggtgccgcgcaagcgcggcgcgaaggcccgcgtggccgaaaccccgcct
gcgccagtcaaggcgcccgccaagaagcggacaccggtcaggcgaaaggcaaaggtcgcg
ctcgagggggcggttccggccgagctaccggagcatttcaaaccgcagctggccaccctg
gtcgatacggtaccgggcggggactggcggtacgaaatcaagttcgacggctaccggatg
ctcgcgcgcatcgactccggcgaggtcaggctgtttacccgcaacggccacgactggacg
gcgaagatgccccagcaggccgcggcgcttgcggggctcgggctcgagtccgggtggctg
gatggcgaggtggtggtgccgaacgaggagggcacgccggacttccaggccttgcagaac
gctttcgaggcggggcgcagcggcagcattctctattacctgttcgacatgccttacctg
aacggcatggacctgcgcgaggtggcgttggagcagcgccgcgcagcgctgcgcgaggtg
ctggagcgcagtgacagcgagctgctgcgcttctccgaggacttcaccgagcagccggac
agcattctggaaagcgcctgccagatgaaactcgaagggctgatcggcaagcgcgctggc
agcacctacacctcgcgacgcagtagcagctgggtgaagatcaaatgcagcaatcggcag
gaattcatcatcgtcggctatacccagccaaagggtacccgcaccggtttcggcgcgctg
ctgctcggcctgcacgacgacaacggcgagctgcgttacgccggcaaggtcggcaccggc
ttcaaccatgcaacgctgcagagcctgcacaagaagctgaagaagctggaaaccgataaa
agcccgctggcaaaggcacccccagcagccgatgcacgtggcgcgcagtggctcaagccg
gagctgatgtgcgaagtcgcctatgccgaaatgacccgacagggtgtggtgcgccactcg
gtgttccacggcctgcgaaccgacaagccggccgaggccatcacccacgagcgggccaaa
ccagtcgccagggcaaagccgaacgtcgccgacaaggccgatgccctcggcagcggtcgg
atcaagatttccaaccccgaacgggtcatcgaccccagcagcggcatcaccaagatcgaa
ctggcccgcttctacgcgcagatcgccccctgggcgctgccgcaattgcagaaccggccg
ctggcgctggtccgcgcgcctgaaggcatcactagcgagctgttcttccagaagcacgcc
gacaagctggccatcccgcatatcacccagctggacccggcgctcgatcccaagcacggc
gcgctgctggtgatcgacagcgccgaggcgctggtcggcgccgcgcagatgggcactatc
gagctgcacagctggaacgccgtggcgcccaatctcgagcaccctgaccgcttcgtgctg
gacctcgaccccgatccggctctgccgtggaagcgcatgctcgaggcgacccagctgacc
cagacgctgctggacgagatcggcctggcatcgtttctcaagaccagcggcggcaagggg
ctgcacatcgtcgtaccgctcgaccctgtgcatgactggagcgaggtgaaatccttcagc
caggcgattgccaggcacctggcaaaactcctgccgtcccatttctccgcggtcagcggg
ccgaagaaccgggtcgggcgcatcttcatcgactacctgcgcaacagccgtggcgccagc
accgtcgcgccgtactcggtacgcgcccgcgaggggctgccggtttccgtacccatccac
cgcgacgagttggcggacctcaagggcgccaacctgtggacggtgcgcaacctgctggaa
cgcctgcaggaactcggtggcgacgacccctgggcgtccatcggcaagacccgccagcgc
ctgaccagaaagattcgcgaccgcctgaacgcctga

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