KEGG   Pseudomonas stutzeri ATCC 17588: PSTAB_2643Help
Entry
PSTAB_2643        CDS       T01571                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
psz  Pseudomonas stutzeri ATCC 17588
Pathway
psz03030  DNA replication
psz03410  Base excision repair
psz03420  Nucleotide excision repair
psz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PSTAB_2643
   03410 Base excision repair
    PSTAB_2643
   03420 Nucleotide excision repair
    PSTAB_2643
   03430 Mismatch repair
    PSTAB_2643
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psz03032]
    PSTAB_2643
   03400 DNA repair and recombination proteins [BR:psz03400]
    PSTAB_2643
Enzymes [BR:psz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PSTAB_2643
    6.5.1.6  DNA ligase (ATP or NAD+)
     PSTAB_2643
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PSTAB_2643
DNA replication proteins [BR:psz03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    PSTAB_2643
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     PSTAB_2643
DNA repair and recombination proteins [BR:psz03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PSTAB_2643
   NER (nucleotide excision repair)
    Other NER factors
     PSTAB_2643
   MMR (mismatch exicision repair)
    Other MMR factors
     PSTAB_2643
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AEJ05924
UniProt: F8H3X5
LinkDB All DBs
Position
2838395..2840101
Genome map
AA seq 568 aa AA seqDB search
MKAFATLYSRLDATTSSNAKLAAMRDYFREADPADAAWAVYFLAGGRPRQLVPTRVLRET
AMQAAGLPEWLFEESYQAVGDMAETISLLMPEAEHSSEDGLAVWMQDRLLPLRGLPPEEL
AERLPALWAQLDRLSLMVCIKLITGAFRVGVSKLLVTRALASLADLDPKRVAQRLVGYTD
LSHRPSAEGYRALIAEESEHEHAQRGGQPYPFFLAHALQAPVDTFDTLLGAPDNWFIEWK
WDGIRAQLVKRDGQIWVWSRGEELVSERFPELCELARCLPDGTVIDGEILVWKHAPETLA
GELFDDASTGEPSADGFGVQPFALLQQRIGRKNLTAKVLQDAPVAVLAYDLLEWQGDDWR
QREHRERRQQLEAVVGQCPSPQLMLSPLVSGADWQDLARQREASRQLGVEGMMIKARAAQ
YGVGRTKDVGVWWKWKIDPYSVDAVLIYAQRGHGRRASLYTDYTFAVWDGEPGDPERKLV
PFAKAYSGLTDEEMRKVDAIVRKTTVEKFGPVRSVTPTLVFELGFEGIAASSRHKSGIAV
RFPRMLRWRLDKPVDEADTLETLKELLG
NT seq 1707 nt NT seq  +upstreamnt  +downstreamnt
atgaaagccttcgccacgctctacagccgcctggacgccaccacgtcgagcaatgccaaa
ctggccgcgatgcgcgactattttcgcgaggccgatccggccgacgctgcctgggcggtc
tacttcctggccggcggtcgcccgcgtcaactggtcccgacccgcgtcctgcgcgaaacc
gccatgcaggcggcgggcctgcccgaatggctgttcgaggaaagctaccaggcggtcggc
gacatggccgagaccatctcgctgctgatgcccgaggccgaacacagctccgaggacggg
ctggccgtgtggatgcaggaccgactgctaccgctgcgcggcctgccgccggaggagctg
gccgaacgcttgccggcgctctgggcacagctggaccggctcagcctgatggtctgcatc
aagctgatcaccggcgcctttcgcgtcggcgtctcgaagctgctggtcacccgcgcgctg
gcctcgctggccgacctcgaccccaagcgtgtcgcgcagcgcctggtcggctacaccgac
ctgtcccaccgacccagcgccgagggctatcgcgcgctgatcgccgaagaatccgagcat
gagcatgcccagcgcggtggccagccctacccgttctttctcgctcatgcgctgcaggcc
ccggtggacacgttcgacacactgcttggcgcgccggacaactggttcatcgaatggaag
tgggatggcatccgcgcccagctggtcaagcgcgacgggcagatctgggtctggtcgcgc
ggtgaggagctggtcagcgagcgttttcccgagctgtgcgaactggcccgctgcctgccc
gacggcacggtgatcgatggcgagatcctggtctggaagcatgccccggagaccctggcc
ggcgagctgttcgacgacgccagcaccggcgagcccagcgccgatggcttcggcgtgcag
cccttcgccctgctgcagcagcgcatcggccgcaagaacctgaccgccaaggtcctgcag
gatgccccggtcgcagtactcgcctacgacctgctggaatggcagggcgacgactggcgg
cagcgcgagcaccgcgaacgccgccagcagctcgaggcggtcgtgggccaatgcccgagc
ccgcagctgatgctttcaccactcgtaagcggagcggattggcaggacctggcccgccag
cgcgaagcctcccgccagctgggcgtggaaggcatgatgatcaaggcgcgcgcggcccag
tacggcgtcggccggaccaaggacgtcggcgtctggtggaaatggaagatcgacccctac
tccgtcgatgccgtgctgatctatgcccagcgcggtcatggccgccgcgccagcctttat
accgactacacctttgccgtctgggacggcgagccgggcgaccctgagcgcaagctcgtc
cccttcgccaaggcctattccggcctcaccgacgaggaaatgcgcaaggtcgacgccatc
gtgcgcaagaccaccgtggagaagttcggcccggtgcgcagcgtcaccccgaccctggtg
ttcgaactcggcttcgaaggcatcgccgccagcagccgccacaagagcggcatcgccgtg
cgcttcccacgcatgctgcgctggcggctcgacaagccggttgacgaagccgatacgctg
gagacgctgaaggaactgctgggatga

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