KEGG   Paraburkholderia terrae: C2L65_08420Help
Entry
C2L65_08420       CDS       T05318                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pter  Paraburkholderia terrae
Pathway
pter03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pter00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C2L65_08420 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pter03400]
    C2L65_08420 (ligD)
Enzymes [BR:pter01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C2L65_08420 (ligD)
DNA repair and recombination proteins [BR:pter03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C2L65_08420 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AUT59615
UniProt: A0A2I8EJ35
LinkDB All DBs
Position
1:complement(1883657..1886515)
Genome map
AA seq 952 aa AA seqDB search
MADKLDTYQRKRRFDVTPEPSGTAARAKVTKTAAKKTAKQHRLSFVIQEHDARRLHYDFR
LELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPLEYGSFEGSIPEGNYGAGSVIVWDRGT
WEPTGGEAGARDAYKAGKLKFHLNGEKLHGGWTLVRSHMRGSGDKEQWLLIKERDDDARS
EADFDVLEERQGSVLSDAPGARGGTNGTSGSGRAAAGKSKSKEERANASIKATKAAASRR
SKGTPADRPDIVATRNAESLRELASHPSIEGAVQAKLPAALKPQLAILVDSAPAGDDWLY
EIKFDGYRVMARIDHASKDSVKIFTRAGNDWTAKFSKQVKAIARIGLDSAWLDGEAVVLD
SNGVPSFQALQNAFDAQRPQDITLYLFDLPYLNGYDLRGVPLEQRRAILHALLETVDDDT
LRFSEDFGFDADQLLKSACDMQLEGIIGKRRDSYYVSGRSPAWIKLKCRRRQEFVIGGYS
EPAGSREAFGALLLGVYDTKGKLQYAGRVGTGFDAAKLRSIKQELDARETQKMPFASEPR
ERSRTPVHWVKPELVAECNFAEWTSDGVVRQASFVSLRSDKPAKQIVHEAPSKGADVQQM
TEEMNAGQAKTSTAKKRASKTADVEPTPATKRAKTSGVETRGKAATKSTSKTATVTISGV
RISHPDRVIDKSTGARKIELAEYYASVASWMLPFLKDRPVALVRAPEDIGGELFFQKHSQ
KLAIPNITQHSGLDPDHPPLLTIESEAALVGAAQMGTIELHTWNAVAANIEKPDRMVFDL
DPDPALGWKRMIEAAQLTRELLEELGLASFCKTSGGKGLHVVVPIAKQLGWDEVKAFTQA
VAQHMAAALPKHFAAKMGAQNRKGKIFVDYLRNNRGSSTVCAFSLRARPGLGVSVPLAWD
EVPGTTAGDQWNIANLHERLDALKSDPWADYAKTKQRITAAMRRRLDMAEHD
NT seq 2859 nt NT seq  +upstreamnt  +downstreamnt
atggccgacaagctcgatacctatcagcgcaagcgccgcttcgatgtaacgccggagccg
tcggggaccgctgcgcgcgcgaaggttaccaagacagccgcaaaaaagaccgcaaagcag
caccgcttgtcgttcgtgatccaggaacacgacgcgcgacgcctgcattacgacttccgt
ctcgaactcgacggcacgctcaaatcctgggccgtgccgaaaggaccgagcctcgatccg
tccgtcaagcggcttgccgtgcatgtcgaagatcacccgctcgaatacggttcgttcgaa
ggctcgattcccgaaggcaactacggcgcgggctcggtgatcgtctgggaccgcggcacg
tgggaaccgaccggcggcgaagcgggcgcgcgcgacgcatacaaggcaggcaagctcaag
ttccacctgaacggcgagaagctgcacggcggctggacgctggtgcgcagccacatgcgc
ggcagcggcgacaaggagcagtggctgctcatcaaggaacgcgacgacgacgcgcgcagc
gaagccgatttcgacgtgctcgaagagcggcagggcagcgtgctgtcggatgcgccgggc
gcgcgcggcggcacgaacggcacaagcggctccggcagagccgccgcgggcaagtcgaag
agcaaagaggagcgcgccaacgcgtcgatcaaggcgacgaaagccgccgcatcgcgcaga
tccaaaggcacgcccgccgaccgccccgacatcgtcgcgacgcgcaatgccgaatcgctt
cgcgaactggccagtcatccgtcgatagaaggggcagtccaggcaaagcttcccgccgca
ctcaagccgcaactggcgatactcgtcgacagcgcgcccgccggcgacgattggctctac
gagatcaaattcgacggctaccgtgtaatggcgcgcatcgatcacgcgtcgaaagattcc
gtgaagatcttcacgcgcgcaggcaacgactggaccgcgaagttcagcaagcaggtgaag
gcgatcgcgcgcatcggactggatagcgcgtggctcgacggcgaggccgtcgtgctcgac
agcaacggcgtgccgagcttccaggcgctgcaaaacgcattcgatgcacagcggccgcag
gacatcacgttgtatctgttcgacctgccgtatctgaacggctacgacctgcgcggcgtg
ccgctcgaacagcggcgcgcgatcctgcacgcgctactcgaaaccgtcgacgacgacacg
ctgcgcttttccgaggacttcggtttcgacgcggaccagttgctgaagagcgcatgcgac
atgcagctcgaaggcatcatcggcaagcggcgcgacagctattacgtgtcgggtcgctcg
cctgcgtggatcaagctcaagtgccggcgccgccaggaattcgtgatcggcggttattcg
gaaccggcgggcagccgcgaggcattcggcgcgctgctgctcggcgtctacgacacgaag
ggcaagctgcaatacgcggggcgcgtcggcacgggtttcgacgcggccaaactgcgttcg
atcaagcaggaactcgacgcgcgcgaaacgcagaagatgccgttcgcaagcgagccgcgc
gaacgaagccggacgcccgtgcattgggtgaagccggaactcgtcgccgaatgcaacttc
gcggaatggacgagcgacggcgtcgtgcggcaggcatcgttcgtcagcttgcgcagcgac
aagcccgcgaagcagatcgtccacgaagcgccaagcaaaggagccgacgtgcaacagatg
acggaagagatgaacgccggtcaggcgaagacatcgacggcgaaaaagcgcgcgtcgaag
acggcggatgtcgagccaacgcccgcaacgaaacgtgcgaagacgagcggcgtggaaacg
cgaggaaaggcggccacgaaatcgacgagcaagacggccaccgtgacgatttccggcgtg
cgcatttcgcacccggaccgcgtgatcgacaagagcaccggcgcgcgcaagattgaactc
gccgaatactacgcgtcggttgcgtcgtggatgctgccgtttctaaaggatcgcccggtc
gcgctcgtgcgcgcaccggaagatatcggcggcgaactgttttttcagaaacacagccag
aagctcgcgattcccaatatcacgcagcattcggggctggacccggaccatccgccgctg
ctgaccatcgaaagcgaagcggcgctggtcggcgccgcgcagatgggcacgatcgaactg
catacgtggaacgcggtggccgcgaacatcgagaagccagaccgcatggtgttcgatctc
gacccggacccggcgctcggctggaagcggatgatcgaagcggcgcagctcacgcgcgaa
ctgctcgaagaacttggcctcgcgtcgttttgcaagacgagcggcggcaagggactgcac
gtcgtcgtgccgatcgcgaagcagctcggctgggacgaggtgaaggcgttcacgcaagcc
gtcgcgcagcacatggcggcggcgctgccgaagcactttgccgcgaagatgggcgcgcag
aatcgcaagggcaagatttttgtcgactatctgcgcaacaaccgtgggtcgagcaccgtt
tgcgcattttcgctgcgcgcgcggccggggctgggcgtatcggtgccgctcgcatgggac
gaagtgcccggcacgacggcgggcgatcaatggaacatcgcgaatctgcacgagcggcta
gacgcgctgaaaagtgacccgtgggccgactacgcgaagacgaagcagcgcatcacggcc
gccatgcggcgcaggctggatatggcggagcacgattga

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