Phaeodactylum tricornutum: PHATRDRAFT_11965
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Entry
PHATRDRAFT_11965 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pti
Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pti03016
]
PHATRDRAFT_11965
Enzymes [BR:
pti01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
PHATRDRAFT_11965
Transfer RNA biogenesis [BR:
pti03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PHATRDRAFT_11965
Prokaryotic type
PHATRDRAFT_11965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Palm_thioest
Motif
Other DBs
NCBI-GeneID:
7200654
NCBI-ProteinID:
XP_002179699
JGI:
11965
UniProt:
B7FY99
LinkDB
All DBs
Position
7:717674..718336
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AA seq
194 aa
AA seq
DB search
MVKVGHGGTLDPLATGVLVIGVGSGTKELQRYLTGSKRYIAGAELGFETTTLDSEGNVTK
TASFDHLSVDAIENVLPDFTGPISQIPPIFSALRRNGKKLYTLAREGVSADEIEIEARQV
EIYDLTLVAKATTKLPRFQLDVECGGGTYIRSLVRDIGYKLDSVATMIALERTQQGQFEL
DKCLAKDEWSADSI
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaagtcggacacggtggtactctagaccccctcgcaacgggtgtactcgtcatt
ggcgttggatctggaacgaaagagttgcaaaggtacttgaccggatcgaagaggtatatt
gctggtgcagagctcggcttcgagacgacaacgctagattcggagggaaatgtgacgaag
actgcatcttttgatcatctgagtgtggatgcgatcgagaatgttcttccagatttcact
ggtccgatttcacaaatcccaccgatcttcagcgcacttcgaagaaacggcaagaaactt
tacacattagcccgagagggcgtttccgcggatgagatagagatcgaggcacgtcaagtt
gagatttatgacctgacgcttgttgctaaggctaccacaaagctgccaagatttcaattg
gatgtcgaatgtggaggtgggacctatatacgatccttggtacgggatatagggtacaag
ctcgactcggtcgctaccatgatcgctctcgagcgaacgcaacaaggacagtttgagctg
gacaagtgcctcgccaaagatgaatggtctgctgatagcatt
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