Parageobacillus thermoglucosidasius DSM 2542: AOT13_17340
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Entry
AOT13_17340 CDS
T04476
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ptl
Parageobacillus thermoglucosidasius DSM 2542
Pathway
ptl03410
Base excision repair
ptl03430
Mismatch repair
ptl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AOT13_17340
03430 Mismatch repair
AOT13_17340
03440 Homologous recombination
AOT13_17340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptl03400
]
AOT13_17340
DNA repair and recombination proteins [BR:
ptl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AOT13_17340
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AOT13_17340
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AOT13_17340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
TetR_C_32
Motif
Other DBs
NCBI-ProteinID:
ALF11639
UniProt:
A0A369WVP8
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Position
complement(3515465..3517822)
Genome browser
AA seq
785 aa
AA seq
DB search
MLIAKTRWDVKRPDENIVKHLVEQLRIDPLIATLLVHRGVRTAEEANAFLYPLKQPFYDP
FLLDGMERAVARIQRAIQDGEHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFT
EGYGPNEKAFRWAKDQGFSLIITVDNGIAAVKEVALANELGMDVIITDHHEVGPTLPEAY
EIIHPKKPGSTYPFRELAGVGVAFKVAHALLGEVPRYLLDVAAIGTIADLVSLTGENRVL
VAQGLEQLRKTKRIGLRALCTQCGIDAEKIDEQTVGFIIAPRMNAAGRLGEADPAVRLLM
TEDEEEAKRLAKEMDDLNRERQQLVAEIAEEAAQIIQEQFPPSENKVLVVAKEGWNPGVI
GIVASRLVEQFYRPTIVLSIDVEKGIAKGSARSIHGFDMFSSLSTCRDILLHFGGHPMAA
GMTLSLEDVGELRRRLNALADDMLTDDDFTPITSIDAVCSVSDLTMAVAEQLEKFAPFGV
GNAKPLFLMENVSVETMRRVGADQSHLKAVFAQNGAAIDSVGFGFGYLRDEIAPDAKVSV
VGELVINEWNHLRKPQLMIYDMAVHECQLFDIRGMRDVRSLIAALPPDKRMLIMFREDTA
DALGIGAYKEEIYYAASAEEASRLCLDGRYVVLLDMPPSLEMIKMLLRSSLPARIYALFY
QRETHFFRTLPTREHFKWFYAFLRKRGMFNLAKHGGELARARGWTEETVWFMAKVFLELE
FITQRDGIVSLVPQPAKRDLSESPTYRLKQAQYELESLFLYSTYEQLKRCLFEMKGLHTY
EEANA
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcgcaaaaacacgttgggatgtaaaacggcccgacgaaaatatcgtaaagcat
ttagtggaacaattgcggatcgatccgcttattgccacccttcttgtccatcgcggagtc
cgcacggcagaagaggcgaacgcgtttttatatccgctgaaacaaccgttttatgatccg
tttttgctagatgggatggagcgggcggtcgcgcggattcagcgggcgatacaggatggg
gagcatattttagtatatggcgattatgatgcggacggcgtaagcagcacgacggtaatg
gtcagtgcgctgaaggaagctggcgccattgtggatttttacattcccaaccgctttacc
gaaggatatggcccgaatgaaaaagcgtttcgctgggcaaaggatcagggattttccttg
attattacggtcgataatggcattgccgcggtgaaggaagtggcgcttgccaacgagctc
gggatggatgtcattattaccgaccatcacgaagtggggccgacgctgccggaagcgtat
gaaatcattcatccgaaaaagcctggaagtacatatccgtttcgagaattagccggggtt
ggagtggcgtttaaagttgcgcatgcgctgctcggagaggtgccgcgctatttattggat
gtcgccgcaatcggaacgatcgccgatctcgtttcccttaccggcgaaaatcgcgtattg
gtggcgcaagggcttgagcagttgcgaaagacaaaacgtataggattgcgcgcattgtgt
acacaatgcgggatagacgcagaaaaaattgacgagcaaacggtgggatttatcattgcg
ccgcggatgaatgcggccgggcgattgggggaagccgatcccgctgtaagattgctgatg
acggaggatgaagaagaagcaaaaaggcttgcgaaagaaatggatgatttaaaccgggaa
cggcagcagcttgtcgcggaaatcgcggaagaagcggcacaaatcatacaggaacaattt
ccgccatctgagaataaagtgctggtggtggccaaagaaggatggaatcccggagtcatt
ggcattgttgcatcccggctggtcgaacagttttatcgcccgacgatcgtgctaagcatt
gatgtggaaaaaggaattgcgaaaggttcggcgcgaagcattcacgggtttgatatgttt
tcaagcttgtcgacgtgccgcgatattttgctgcattttggcggccatccgatggcagcg
ggaatgacgctgtctcttgaagatgttggcgaattgcgccggcgtcttaacgcgcttgct
gacgatatgctgacagacgatgattttacgccaataacatcgattgacgcggtttgttcc
gtatctgatttaaccatggcggtggcggagcagctggaaaaattcgctccatttggtgtc
ggtaatgccaaacctctttttttaatggaaaatgtgtcagtggaaacgatgcgccgcgtc
ggtgccgatcaatcgcatttaaaggccgtttttgcgcaaaatggcgctgcaattgatagc
gttggcttcggcttcggatatttgcgcgatgaaatcgctccggatgcgaaagtgtcggtt
gtcggcgagcttgttattaatgagtggaatcatcttcgcaagccgcagctgatgatttat
gatatggcggtgcatgaatgccagctgtttgatattcgcggtatgcgcgatgtaaggtcg
ctgattgcagcgcttccgccagataagcggatgctcattatgtttcgcgaagatacggcg
gatgcgttaggaatcggagcatataaagaagagatttattatgccgcctcagcggaagaa
gcatcgcggctttgtttagatggccgctatgtggtgctgttggatatgcctccgtctttg
gaaatgataaaaatgttattacgttctagtttacctgcacgcatttatgcgttattctat
caaagggagactcattttttccgcacgttgccgacgcgtgaacattttaagtggttttac
gcgtttttgcggaagcggggcatgtttaatttggcgaaacacggcggagagttggcacgt
gcgcgtggctggacggaagaaaccgtctggtttatggcgaaagtgtttcttgaactggaa
tttataacgcaacgggatggcatcgtatcgcttgttcctcagccggctaagcgagattta
agcgaatcgccgacttatcgcttgaaacaagctcagtatgagctggaaagtcttttttta
tattccacatatgaacaattaaagcggtgtctttttgaaatgaaaggtttgcacacatat
gaggaggcaaatgcataa
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integrated database retrieval system