Paramecium tetraurelia: PTMB.344c
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Entry
PTMB.344c CDS
T01055
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PTMB.344c
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptm03400
]
PTMB.344c
DNA repair and recombination proteins [BR:
ptm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
PTMB.344c
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
AAA_27
DUF6273
Motif
Other DBs
NCBI-GeneID:
2898503
NCBI-ProteinID:
XP_001347169
UniProt:
Q6BFM8
LinkDB
All DBs
Position
MT
AA seq
794 aa
AA seq
DB search
MDQDQNLLTLVVQIIYTNNERHLNCAFLDQDRRMIEVCEFQDNEHFSVFECLVLQVNPNG
QDAKLTVLIQMPELESENRKVRDILEQCEFEVIEKNKKDFSEINLSNLNKVLKKNFNTCR
VEEQICTQCIQCLLEHTRLYKDDTNTQKFNIGLLNLHKFMRLDLAAINALMIFPKQGIKQ
FDSGNNASTLVDYLDRCITQMGKRCLRRWIKMPLQSIQEINQRLNIVEYLYQNSSFRQFL
NEDFLKRIPDLDKLYAKFYKVASDKRNNANLSDCVKVYQLIQKIKDIIKRVNQEMYQSQN
SILQEIFLKPFEENLSDFEKLEEMIEKSIDLSKAYTGEFIVNPRFSEKLMQLSKNITQCM
NDIENVRLDTETELGITVTLIESGTYTYIFEAKKQSADEAFRKNPKKYKTISVKNRALTF
TVEKLQSTVADYVHFRDLYQEVQQEKVQEILKIVCSYYPVMEQASRLISEIDVLSAFASV
ARNAPRAFVRPIFTEKKEILLKESRHPLLEAIDSTCIVNDLEMDRKSSRLHIITGPNMGG
KSTYIRQIAICVLLAHIGCFVPCTTAVVPVIDAIITRVGASDVQTKGISTFMSEMLEASC
MLKTAKPDSLIIIDELGRGTSTSEGFGIAWAIAEHIAKQIQSYCLFATHFHEMTLMEHEI
TGVKNYYVSCVTEDDKITMEYRVRYGAVDRSYGLLVAQMLKFPKEVIDDAKQKAIELETF
EHNLESNFIDEEVPIFNNIDDELQYKVRNSTLQAKERVIKEAEKWKNELTNEKNPQKRKE
IIEKRKQIILKLLK
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggattaggactagaatctattgactttagtggtttaaataatatatacaaataatgag
agacatctaaactgtgcgtttttagatcaagatcgaagaatgattgaagtgtgtgaattt
caagacaatgaacattttagtgtgtttgagtgtctggttctttaagtaaatccaaatgga
taggatgctaaattaacagtgttgatataaatgcccgagttagagagtgagaatagaaaa
gtgcgggatattttagaatagtgtgaatttgaagtaattgaaaaaaacaaaaaagatttt
tcagaaattaatctttccaatctaaacaaggtcttgaagaagaattttaacacatgcaga
gttgaagagtagatttgcactcaatgtattcaatgtttattagaacatactcgtctttac
aaagatgacacaaatacttaaaaatttaatataggattacttaacttacataaatttatg
aggttagacttggcagccatcaatgccttaatgatattcccaaagcaaggcataaaataa
tttgacagtggaaacaatgctagcactttagttgattatttggatagatgtattactcaa
atgggaaaaagatgtttaagaagatggatcaaaatgccattataatcaatacaagaaatc
aattaaagattgaatatagtcgagtacttgtattagaactcttccttcagataattttta
aatgaagactttttaaaaagaatacctgatttagacaagttatatgccaaattctataag
gtggcaagtgataagaggaataatgctaatcttagtgattgtgttaaagtttactaatta
atccaaaaaatcaaagacataatcaaaagagtcaatcaagaaatgtattagagtcaaaat
tccatactttaagagatatttcttaaaccttttgaagaaaacttaagtgatttcgagaaa
ttggaagaaatgattgagaaatccattgatttaagcaaagcttacactggtgaatttatt
gtaaatcctagattttctgagaaattaatgtaacttagtaaaaacattacataatgtatg
aatgacattgaaaatgtaaggctagacactgaaacagaattaggaatcactgttactcta
attgagtctggaacatatacctatatttttgaagctaaaaaacaaagtgctgatgaagct
tttagaaaaaatcctaaaaaatataagactatttctgtgaagaatagagctctaaccttt
acagtagagaagctacagtcaactgttgctgattatgttcattttagagatctttattaa
gaagttcaataggaaaaagtataagaaattttgaaaattgtttgttcttactatcccgtt
atggaataagcatcaagactgatatcagaaatagatgtcttatcagcatttgcatcagta
gctagaaatgctccaagagcatttgtcagaccaatatttaccgagaaaaaggagatttta
ttaaaagaatctagacatccattgttagaagcaatagattctacctgtattgtaaatgat
cttgaaatggatagaaaatcatcaagattgcatataataacaggacccaatatgggtgga
aaatctacttacattaggtaaattgccatttgtgtgttgctggcacatattggttgtttt
gtgccttgcactactgcagttgtacctgtaatagatgccataatcacaagagtaggagca
agtgatgtttagaccaaaggtattagtacttttatgagtgaaatgcttgaagcaagttgt
atgttgaaaactgcaaaacctgattccttaataataattgatgaattaggaagaggaaca
tccacttctgaaggatttggaattgcttgggccattgctgaacatatagcaaaataaata
taatcttattgtttatttgcaactcactttcatgaaatgacacttatggaacatgaaatt
actggagtaaaaaattattatgtaagttgtgtcacagaagatgataaaattaccatggaa
tatagggttagatatggagctgtagataggagttatggattattggttgctcaaatgtta
aagtttccaaaggaggttattgacgatgctaaataaaaggcaatagaattggaaacattc
gaacataatctagaatcaaattttattgatgaagaagtcccgatctttaataatattgat
gatgaacttcaatacaaggttagaaatagtacacttcaagcaaaagagagagtgatcaag
gaggcagaaaagtggaaaaatgagttaacaaatgaaaagaatccttaaaaaagaaaagaa
ataattgaaaaaaggaaacaaatcatactaaaattattaaaatga
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