Pseudoalteromonas translucida KMM 520: PTRA_b0599
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Entry
PTRA_b0599 CDS
T04220
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ptn
Pseudoalteromonas translucida KMM 520
Pathway
ptn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTRA_b0599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptn03019
]
PTRA_b0599
Enzymes [BR:
ptn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PTRA_b0599
Messenger RNA biogenesis [BR:
ptn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PTRA_b0599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
AAA_19
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ALS35054
UniProt:
A0A0U2XCT1
LinkDB
All DBs
Position
II:575360..576661
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AA seq
433 aa
AA seq
DB search
MNFKSFSFAPELVQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPII
QKLFESEVSTTNAPHALVLAPTRELAEQIANNFKDFAKHTSLKVVSLFGGVNTAGQANAL
KEGVDIVVATPGRLLDHIRLGNLSLASVKHLVLDEADRMLDMGFIEEMQGVIKSCADDRQ
ILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVAHVVYPVEERRKQELLSELIGK
KNWQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVLVAT
EVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGKEGQAISFVSREEENMLFEIET
LIGQKIKRVYLEGYAVSNREVLIDKIGKKPAHLRRTRANKPSGQATGEARAVNRSRISKI
RKSLKGEKLSLKK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaatcttttagttttgctcctgaacttgttcaggcgttagacgaacttaac
tatcacacccttacgcccattcagcgcgcagcaattcctgctgttcgtaaaggtaaagac
gttttagcaagtgcacaaacgggtacgggtaaaaccgccgcgtttgcgctaccaattatt
caaaaattatttgagtctgaagtaagcactactaatgctccgcatgctttagttttagcg
cctacgcgcgaacttgcagagcaaatagcaaataactttaaagactttgcaaaacatact
tcgttaaaagtagtcagcttatttggtggtgttaacaccgcaggccaagctaatgcactt
aaagaaggtgttgatattgtagtagcaacgccagggcgtttacttgatcatattcgctta
ggtaacttaagccttgccagcgtaaagcatttagtacttgatgaagccgatcgtatgctc
gatatgggctttattgaagagatgcaaggcgttataaaaagctgcgctgacgatcgtcaa
attttattattttcagccactttcccagcagcaattaaacagtttgcatctaaagtatta
aaacagccggaaatagtacgtgttgatcaaacaaacagtactgcaagcactgtagcgcat
gtggtttacccagttgaagagcgccgtaagcaagagctgctttctgagctaattggtaag
aaaaactggcagcaagtgttagtatttgtaaacatgaaagaaacagccgatgagctagta
acagagcttaaccttgatggtattccggctgcggtttgtcatggcgataagtcacaaggt
aatcgtcgtcgtgcgctacgtgaatttaaagaaggcaaagtacgtgtattagtggcaaca
gaagttgcggcgcgtggtattgatattgatggtttaccgcgtgtaattaatattgactta
ccttggcttgcagaggactacgtacaccgtattggtcgtactggccgcgcaggtaaagaa
ggccaagcaatttcgtttgtaagccgtgaagaagaaaacatgttgtttgaaattgaaacc
ttaattggtcaaaaaattaaacgtgtttacttagaaggctatgcagtaagtaaccgtgaa
gtgttaattgataaaattggcaaaaagcctgcacacttacgtcgaactcgtgctaataag
ccatctggtcaagcaactggcgaagcaagagcagtaaatcgctcacgtatttctaaaata
cgtaaaagcttaaaaggcgaaaaactgtcgcttaaaaagtaa
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